View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18510_high_16 (Length: 242)

Name: NF18510_high_16
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18510_high_16
NF18510_high_16
[»] chr1 (4 HSPs)
chr1 (13-221)||(29423136-29423344)
chr1 (13-220)||(29453367-29453574)
chr1 (13-207)||(29443384-29443578)
chr1 (13-211)||(29467843-29468041)
[»] chr2 (26 HSPs)
chr2 (13-212)||(9320862-9321061)
chr2 (13-221)||(12018951-12019159)
chr2 (19-212)||(9328479-9328672)
chr2 (13-220)||(9284253-9284460)
chr2 (13-211)||(10352990-10353188)
chr2 (149-220)||(9061358-9061429)
chr2 (13-220)||(11987550-11987757)
chr2 (148-212)||(8579703-8579767)
chr2 (77-209)||(9364511-9364643)
chr2 (36-220)||(9315891-9316075)
chr2 (93-211)||(7115788-7115906)
chr2 (89-211)||(10335737-10335859)
chr2 (13-134)||(10347743-10347864)
chr2 (13-220)||(12012609-12012819)
chr2 (149-220)||(9291794-9291865)
chr2 (13-134)||(8573568-8573689)
chr2 (149-210)||(8573725-8573786)
chr2 (149-211)||(10371718-10371780)
chr2 (13-134)||(9065656-9065777)
chr2 (125-210)||(9065789-9065874)
chr2 (149-206)||(10347650-10347707)
chr2 (148-208)||(16268952-16269012)
chr2 (19-134)||(9061210-9061325)
chr2 (157-208)||(9274384-9274435)
chr2 (13-57)||(10335879-10335923)
chr2 (13-57)||(10371893-10371937)
[»] chr8 (1 HSPs)
chr8 (13-221)||(41966768-41966979)
[»] chr3 (2 HSPs)
chr3 (13-134)||(37462447-37462568)
chr3 (150-211)||(37462349-37462410)
[»] chr7 (6 HSPs)
chr7 (149-212)||(45230288-45230351)
chr7 (149-212)||(45243550-45243613)
chr7 (13-134)||(45237908-45238029)
chr7 (13-134)||(45243657-45243778)
chr7 (149-207)||(45237811-45237869)
chr7 (13-57)||(45230467-45230511)
[»] chr4 (1 HSPs)
chr4 (13-188)||(26574762-26574940)
[»] scaffold0667 (1 HSPs)
scaffold0667 (148-189)||(4353-4394)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 29423344 - 29423136
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423344 aagaatatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 29423245  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29423244 cgatggaggtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 29423145  T
Q  213 gatcaagcc 221  Q
    |||||||||    
T  29423144 gatcaagcc 29423136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 29453367 - 29453574
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||  |||||||||||| ||||| ||| |||||||||||||||    
T  29453367 aagaatatggatgtagagatagctggtgtgaactttttactttggcggaatcatgtttcattttacctttgaaaactttgtggcctttagcttattcgag 29453466  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29453467 cgatggaagtatggttctgttggaagtagattgtgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttc 29453566  T
Q  213 gatcaagc 220  Q
    ||||||||    
T  29453567 gatcaagc 29453574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 29443384 - 29443578
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||||| |||||| |||||||||    
T  29443384 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 29443483  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattccta 207  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||| |||| ||||||||||||    
T  29443484 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 29443578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 29467843 - 29468041
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||    |||||||||||| ||||  ||| || ||||||||| ||||| |||||||||    
T  29467843 aagaatatggatgtagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgag 29467942  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaattt 211  Q
    |||||||||||||||||||||  ||||||| | ||||||| |||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||    
T  29467943 cgatggaagtatggttctgtttgaagtagaccatgagaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaattt 29468041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 9321061 - 9320862
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||| | ||||||||| |||||||||||||||||| |||   ||||||||| |   |||||||||||| ||||||||| ||||| |||||||||    
T  9321061 aagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgag 9320962  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
     |||||||  | |||| |||||   |||||| ||||||||||||||||||||||| | ||||||| ||||||||||| |||| ||||||||||| |||||    
T  9320961 tgatggaaaaaaggttttgttgagggtagatgctgagaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcctgatttc 9320862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 12018951 - 12019159
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||||||||||||| |||||||||||||||||||||   ||||||||||||   |||||||| | |  |||||| | ||||| |||||||||    
T  12018951 aagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccctttaggttattcgag 12019050  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
     |||||||  | |||| ||||| | ||| ||| | | | |||| ||||||||||| | |||||| | |||||||||| |||| |||||||||||||||||    
T  12019051 tgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcctaatttc 12019150  T
Q  213 gatcaagcc 221  Q
    ||| |||||    
T  12019151 gatgaagcc 12019159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 9328672 - 9328479
Alignment:
Q  19 atggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatgg 118  Q
    |||||| ||||||||| |||||||||||||||||| |||   |||||||||||   |||||||||||| ||||||||| ||||| ||||| ||| |||||    
T  9328672 atggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtgatgg 9328573  T
Q  119 aagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
    ||  | |||| |||||   || |||  |||||||||||||| ||||||| | | ||||| ||||||||||| |||| ||||||||||| |||||    
T  9328572 aaaaaaggttttgttgagggtggattttgagaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcctgatttc 9328479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 9284253 - 9284460
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||| | ||||||||| ||||||||| ||||||||||||   ||||  | ||||| |||| ||||||| ||||||||| ||||| |||||| ||    
T  9284253 aagaatatggttctagagatagttggtgtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctag 9284352  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
     ||||| |||| |||||| ||  || |||||  | |||||||| ||||||||||| | |||||||| ||||||| || |||| ||||||||||||||||     
T  9284353 tgatggtagtaaggttctattagaaatagattgtaagaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttg 9284452  T
Q  213 gatcaagc 220  Q
    ||| ||||    
T  9284453 gatgaagc 9284460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 10353188 - 10352990
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| ||||||||||||| || |||||||||||||||||| |||   |||| | ||||   ||||||||| || ||||||||||||||| |||||||||    
T  10353188 aagaatatggatgtagagagagttggtgtaaactttttactgtggttaaatcttctttcgatttacctttgcaatctttgaggcttttaggttattcgag 10353089  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaattt 211  Q
     ||| |||  | |||| |||||   ||||||  |||||| || |||||||||||| |  ||||| |||||||||||| |||||||| ||||| ||||||    
T  10353088 tgatagaaaaaaggttttgttgagggtagatgttgagaatctattttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaattt 10352990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 9061358 - 9061429
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagc 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||    
T  9061358 gaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattcctaattttgatgaagc 9061429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 11987550 - 11987757
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||||||||||||| |||||||||||||| || |||   ||||||||||||   |||||||||||| ||||||| | ||| | |||||||||    
T  11987550 aagaatatggatgtagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgag 11987649  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
     ||||| |  | |||| ||||| |  |  |||   |||||||| ||||||||||| | |||||||||||| |||||| |||| | ||||||||||| |||    
T  11987650 tgatggtaaaaaggttttgttggatcttaatcacaagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattc 11987749  T
Q  213 gatcaagc 220  Q
    ||| ||||    
T  11987750 gatgaagc 11987757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 8579703 - 8579767
Alignment:
Q  148 agaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
    ||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  8579703 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttc 8579767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 9364643 - 9364511
Alignment:
Q  77 acctttgaaagctttgaggcttttagcttattcgagcgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagt 176  Q
    |||||||||| | ||||||| ||||| ||||||||| |||||||  | |||| | ||| || |||||| | |||||||||||||||| ||||||||||||    
T  9364643 acctttgaaatcgttgaggcctttaggttattcgagtgatggaaagaaggttttattggaaatagatcgtaagaagctgttttggtacgatctcaagagt 9364544  T
Q  177 gaacaagttagttgtgttcaaggaattcctaat 209  Q
    ||| | |||| | |||||| |||||||||||||    
T  9364543 gaaaacgttactagtgttccaggaattcctaat 9364511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 9316075 - 9315891
Alignment:
Q  36 tggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaagtatggttctgttgc 135  Q
    ||||||||||||||||||||||   | || |||||||| ||| |||||||   ||||| || ||||| |||||| || || ||||||| |||||| |||     
T  9316075 tggtgtaaactttttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttctattgg 9315976  T
Q  136 aagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagc 220  Q
    || |||||  | ||||||||||||||| |||  | | |||||||||||||| || |||| |||||||| ||||||| ||| ||||    
T  9315975 aaatagattgtaagaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagc 9315891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 7115788 - 7115906
Alignment:
Q  93 aggcttttagcttattcgagcgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtg 192  Q
    |||| ||||| |||||| || |||||||| | |||||| ||| || |||||  |  ||||||| ||||||||||| | ||||| ||||||||||||||||    
T  7115788 aggcctttaggttattctagtgatggaagcaaggttctattggaaatagattgtaggaagctggtttggtatgatttgaagagcgaacaagttagttgtg 7115887  T
Q  193 ttcaaggaattcctaattt 211  Q
    || ||||||||||||||||    
T  7115888 ttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 10335859 - 10335737
Alignment:
Q  89 tttgaggcttttagcttattcgagcgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagt 188  Q
    |||||||| ||||| |||||  || |||||||||| |||||| ||| || | |||  | ||||| |||||||||||||| | |||||||||||| |||||    
T  10335859 tttgaggcctttaggttattgtagtgatggaagtaaggttctattggaaatcgattgtaagaagttgttttggtatgatttgaagagtgaacaaattagt 10335760  T
Q  189 tgtgttcaaggaattcctaattt 211  Q
    | |||| ||||||||||||||||    
T  10335759 tatgttgaaggaattcctaattt 10335737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 10347864 - 10347743
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||| || |||||||||   ||||||||||||   |||||||   ||  |||||| ||    
T  10347864 aagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctag 10347765  T
Q  113 cgatggaagtatggttctgttg 134  Q
     |||||||||| ||||||||||    
T  10347764 tgatggaagtaaggttctgttg 10347743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 12012609 - 12012819
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||| |||| |||||| ||||||||||||||||||||||  ||||||||||||   |||||||||| |  |||||| | ||| | ||||||||     
T  12012609 aagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgtttcgttttacctttgatatttttgagacctttgggttattcgaa 12012708  T
Q  113 cgatggaagtatgg------ttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcct 206  Q
     ||||| |  ||||      || ||||| | ||| ||| | |||||||| ||||||||||| | ||||||   |||||||||| |||| |||||||||||    
T  12012709 tgatggtaaaatggttttgtttttgttggaggtaaatcataagaagctggtttggtatgatttgaagagt---caagttagttatgttgaaggaattcct 12012805  T
Q  207 aatttcgatcaagc 220  Q
    ||||||||| ||||    
T  12012806 aatttcgatgaagc 12012819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 9291865 - 9291794
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagc 220  Q
    ||||||||||||||||||| | |||||||||||| |||||| |||| |||||||||||||||| ||| ||||    
T  9291865 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagc 9291794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 8573568 - 8573689
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||| | ||||||||| |||||||||||||||||||| |   |||||||||||||   || ||| ||| ||| ||||| ||||| |||||| ||    
T  8573568 aagaatatggttctagagatagttggtgtaaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctag 8573667  T
Q  113 cgatggaagtatggttctgttg 134  Q
     |||||||||| ||||||||||    
T  8573668 tgatggaagtaaggttctgttg 8573689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 8573725 - 8573786
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatt 210  Q
    ||||||||||||||||||| | |||||||||||||| |||| |||| |||||||||||||||    
T  8573725 gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattcctaatt 8573786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 10371780 - 10371718
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaattt 211  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||| |||||| | |||||||    
T  10371780 gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaattt 10371718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 9065656 - 9065777
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||   |||| ||||||   | || ||||| ||||| ||||| | ||| ||||||  |    
T  9065656 aagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccgg 9065755  T
Q  113 cgatggaagtatggttctgttg 134  Q
     |||||||||| ||||||||||    
T  9065756 tgatggaagtaaggttctgttg 9065777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 9065789 - 9065874
Alignment:
Q  125 ggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatt 210  Q
    |||| ||||| | ||||||| | ||||||| |||||||||||| | |||||||||||||||| || |||| ||||| |||||||||    
T  9065789 ggttttgttggaggtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttcctaatt 9065874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 10347707 - 10347650
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcct 206  Q
    ||||||||||||||||||| | |||||||||||| |||||| |||| |||||||||||    
T  10347707 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcct 10347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 16269012 - 16268952
Alignment:
Q  148 agaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaa 208  Q
    ||||| |||||||||||||| | |||||||||| |||||||| |||| |||||||||||||    
T  16269012 agaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattcctaa 16268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 9061210 - 9061325
Alignment:
Q  19 atggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatgg 118  Q
    |||||| ||||||||| ||||||||||||||||||||||   ||||||||||||  | ||||||| |   ||||||||  |||  |||||| || |||||    
T  9061210 atggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctagtgatgg 9061309  T
Q  119 aagtatggttctgttg 134  Q
    | ||| ||||||||||    
T  9061310 aggtaaggttctgttg 9061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 9274435 - 9274384
Alignment:
Q  157 tttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaa 208  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||||||||    
T  9274435 tttggtatgatttgaagagtgaacaagttagttttgttaaaggaattcctaa 9274384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 10335923 - 10335879
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttgg 57  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||    
T  10335923 aagaatatggctgtagagatagttggtgtaaacattttactttgg 10335879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 10371937 - 10371893
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttgg 57  Q
    ||||| |||| | ||||||||| ||||||||||||||||||||||    
T  10371937 aagaatatggttctagagatagttggtgtaaactttttactttgg 10371893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 41966768 - 41966979
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||   |||| |||||||| | | |||||||| | ||| || |||||| || ||| ||    
T  41966768 aagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctag 41966867  T
Q  113 cgatggaagtatggttctgttgcaagtagatcctga---gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaat 209  Q
    ||||||||| | |||||||||||||| |  |  |||   ||| ||||||||||||||| | |||||||||||| ||| || |||| ||||||||||||||    
T  41966868 cgatggaaggaaggttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaat 41966967  T
Q  210 ttcgatcaagcc 221  Q
    || ||| |||||    
T  41966968 tttgatgaagcc 41966979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 37462568 - 37462447
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||| ||||||||| ||||||||||||| |||| |||   ||||||||||||| | |||||||||| ||||||||| ||||  |||||| ||    
T  37462568 aagaatatggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctag 37462469  T
Q  113 cgatggaagtatggttctgttg 134  Q
     |||||||||| |||| |||||    
T  37462468 tgatggaagtaaggttttgttg 37462447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 37462410 - 37462349
Alignment:
Q  150 aagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaattt 211  Q
    ||||||||||||||||||   ||||||||||||||||||| | || ||||| ||||||||||    
T  37462410 aagctgttttggtatgattggaagagtgaacaagttagttatattgaaggagttcctaattt 37462349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 45230351 - 45230288
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
    ||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||| ||||    
T  45230351 gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattcctactttc 45230288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 45243613 - 45243550
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 212  Q
    |||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||| ||||    
T  45243613 gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattcctactttc 45243550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 45238029 - 45237908
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||||| ||||||||| |||||||||||||||||||| |  |||||||||||||  || | | |||||   ||||||| ||||  |||||| ||    
T  45238029 aagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatctgaaattgttgaggcctttatgttattcaag 45237930  T
Q  113 cgatggaagtatggttctgttg 134  Q
    |||| ||||||  |||||||||    
T  45237929 cgatcgaagtaaagttctgttg 45237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 45243778 - 45243657
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 112  Q
    ||||| |||| | ||||||||  ||||||||||||||||||||||   ||||||||||||  || | |||| || ||||||||| ||||  |||||||||    
T  45243778 aagaatatggttctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgag 45243679  T
Q  113 cgatggaagtatggttctgttg 134  Q
     ||| ||||||  |||||||||    
T  45243678 tgatcgaagtaaagttctgttg 45243657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 45237869 - 45237811
Alignment:
Q  149 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattccta 207  Q
    |||| ||||||||||||| ||||||| ||||||||||| || ||||| |||||||||||    
T  45237869 gaagttgttttggtatgacctcaagaatgaacaagttatttatgttcgaggaattccta 45237811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 45230511 - 45230467
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttgg 57  Q
    ||||| |||| | ||||||||| ||||||||||||||||||||||    
T  45230511 aagaatatggttctagagatagttggtgtaaactttttactttgg 45230467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 26574940 - 26574762
Alignment:
Q  13 aagaaaatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttc---accttacctttgaaagctttgaggcttttagcttattc 109  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||   |||||||||||      |||||| || || ||||||||||||||| ||||||    
T  26574940 aagaatatggatgtagagatagttggtgtaaactttttactgtggttaaatcgtgtttcgatgatttacctgtggaatctttgaggcttttaggttattc 26574841  T
Q  110 gagcgatggaagtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagt 188  Q
     |  |||||||  | |||| |||||   ||||||  || ||| ||||||||||||||| |  ||||| | |||||||||    
T  26574840 cattgatggaaaaaaggttttgttgagggtagatgttgtgaatctgttttggtatgatttggagagtaatcaagttagt 26574762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 4394 - 4353
Alignment:
Q  148 agaagctgttttggtatgatctcaagagtgaacaagttagtt 189  Q
    |||||||||||||||||||| | |||| ||||||||||||||    
T  4394 agaagctgttttggtatgatttgaagactgaacaagttagtt 4353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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