View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_high_2 (Length: 508)
Name: NF18510_high_2
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Complemental strand, 42850022 - 42849598
Alignment:
| Q |
13 |
aatatataattaacatgaggagtaacatggaatatgagcgtgtacttagttactttgatgaagactgtgacggaaagatttcgccgaacgagttaaggag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42850022 |
aatatataattaacatgaggagtaacatggaatatgagcgtgtacttagttactttgatgaagaccgtgacggaaagatttcgccgaacgagttaaggag |
42849923 |
T |
|
| Q |
113 |
tcgaatggcgaagattggcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42849922 |
tcgaatggcgaagattggcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggtgatggattattgagtttggaggat |
42849823 |
T |
|
| Q |
213 |
ttgataaagcttatggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849822 |
ttgataaagcttatggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacac |
42849723 |
T |
|
| Q |
313 |
caaaaagtttgaagaggatgttgaaaaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgt |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849722 |
caaaaagtttgaagaggatgttgaaaaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgt |
42849623 |
T |
|
| Q |
413 |
gcttagttttgaagaattcagaatc |
437 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
42849622 |
gcttagttttgaagaattcagaatc |
42849598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Complemental strand, 42840227 - 42839803
Alignment:
| Q |
13 |
aatatataattaacatgaggagtaacatggaatatgagcgtgtacttagttactttgatgaagactgtgacggaaagatttcgccgaacgagttaaggag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||| |||||||| |||||||| |
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|
| T |
42840227 |
aatatataattaacatgaggagtaacatggaatttgagcgtgttcttagttactttgatgaagatggcgacggaaagatttccccgaacgaattaaggag |
42840128 |
T |
|
| Q |
113 |
tcgaatggcgaagattggcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggat |
212 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
42840127 |
tcgaatggcgaagattagcggagagtttcaattgaaagaagtggagattgctattgaggcattggattctgatggtgatgggttattgagtttggaggat |
42840028 |
T |
|
| Q |
213 |
ttgataaagcttatggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacac |
312 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||| |
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|
| T |
42840027 |
ttgatagcgctaatggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgatgatgaagggtgtgggtacataacac |
42839928 |
T |
|
| Q |
313 |
caaaaagtttgaagaggatgttgaaaaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgt |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42839927 |
caaagagtttgaagaggatgttgaaaaagttgggggattctaagtccattgaagaatgtaaagtgatgattaaaagatttgatttggatggtgatggtgt |
42839828 |
T |
|
| Q |
413 |
gcttagttttgaagaattcagaatc |
437 |
Q |
| |
|
||||||||||||||| ||||||||| |
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|
| T |
42839827 |
gcttagttttgaagagttcagaatc |
42839803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Complemental strand, 42847035 - 42846611
Alignment:
| Q |
13 |
aatatataattaacatgaggagtaacatggaatatgagcgtgtacttagttactttgatgaagactgtgacggaaagatttcgccgaacgagttaaggag |
112 |
Q |
| |
|
||||||| ||||||||| ||| | ||||||| ||||||||| |||||||||||||||||||| | |||||||| |||||||| |||||||||||||| |
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|
| T |
42847035 |
aatatattgttaacatgaagagggaaatggaatttgagcgtgttcttagttactttgatgaagatggagacggaaaaatttcgccaaacgagttaaggag |
42846936 |
T |
|
| Q |
113 |
tcgaatggcgaagattggcggagagtttcaattgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||| |
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|
| T |
42846935 |
tcgaatggcgaagattggcggagagtttcaattgaaagaagttgaaattgctattgaggcattggattctgatggtgatgggttattgagtttgggagat |
42846836 |
T |
|
| Q |
213 |
ttgataaagcttatggaatcagggggagaggaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacac |
312 |
Q |
| |
|
||||| | | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
42846835 |
ttgattacgttaatggaatcagggggagaggaggaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacgc |
42846736 |
T |
|
| Q |
313 |
caaaaagtttgaagaggatgttgaaaaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42846735 |
caaaaagtttgaagaggatgttgaaaaaactgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgt |
42846636 |
T |
|
| Q |
413 |
gcttagttttgaagaattcagaatc |
437 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42846635 |
gcttagttttgaagaattcagaatc |
42846611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 432
Target Start/End: Complemental strand, 33931679 - 33931390
Alignment:
| Q |
143 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggatttgataaagcttatggaatcagggggagag |
242 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| ||||||| ||||| ||||| | |||||||||||||| || || | |||||| ||| |||||| |
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|
| T |
33931679 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagag |
33931580 |
T |
|
| Q |
243 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatgttgaaaaaac |
342 |
Q |
| |
|
||| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || ||||||||||| ||||||||||||||| | || || |
|
|
| T |
33931579 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaagaaga |
33931480 |
T |
|
| Q |
343 |
tgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
432 |
Q |
| |
|
|||| || |||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
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|
| T |
33931479 |
tgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
33931390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 432
Target Start/End: Complemental strand, 33938484 - 33938195
Alignment:
| Q |
143 |
attgaaagaagtggaaattgcaattgaggcattggattctgatggcgatggattattgagtttggaggatttgataaagcttatggaatcagggggagag |
242 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| ||||||| ||||| ||||| | |||||||||||||| || || | |||||| ||| |||||| |
|
|
| T |
33938484 |
attgaaagaagctgaaatggctattgaagcaatggattcagatggtgatggttatttgagtttggaggaattaattgctttgatggaagaaggtggagag |
33938385 |
T |
|
| Q |
243 |
gaagaaaaattgaaggatttgagggaagcttttgaaatgtatgataatgaaggatgtggattcataacaccaaaaagtttgaagaggatgttgaaaaaac |
342 |
Q |
| |
|
||| |||| |||||||||||||| ||||| ||||| |||||||||| ||| ||||| || ||||||||||| ||||||||||||||| | || || |
|
|
| T |
33938384 |
gaacaaaagttgaaggatttgagagaagcatttgagatgtatgatagtgagaagtgtggttttataacaccaaagagtttgaagaggatgcttaagaaga |
33938285 |
T |
|
| Q |
343 |
tgggggattctaagtccattgaagaatgcaaattgatgattaaaagatttgatttggatggtgatggtgtgcttagttttgaagaattca |
432 |
Q |
| |
|
|||| || |||||||| ||||| ||||| ||| ||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
33938284 |
tgggtgagtctaagtctattgatgaatgtaaagctatgattaaacattttgatttggatggggatggtttgcttagctttgatgaattca |
33938195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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