View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_high_3 (Length: 494)
Name: NF18510_high_3
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 5523251 - 5523702
Alignment:
| Q |
20 |
tggctgaactctaaaattctaggttcccagggtcaagacnnnnnnnttctactccctttcaagcaaaatcaatcatcacactaatcacgcttaaatcaac |
119 |
Q |
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| T |
5523251 |
tggctgaactctaaaattctaggttcccagggtcaagacaaaaaaattctactccctttcaagcaaaatcaatcatcacactaatcacgcttaaatcaac |
5523350 |
T |
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| Q |
120 |
agaaaatgaagatttccttcgaaactaataaatacaacataaaaaacctaagaattaacactaaaa-aagagttataacaattcaattgcaaaattaagc |
218 |
Q |
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| T |
5523351 |
agaaaatgaagatttccttcgaaactaatgaatacaacatataaaacctaagaattaacactaaaaaaagagttataacaattcaattgcaaaattaagc |
5523450 |
T |
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| Q |
219 |
attgcatgcgcataacaaactacaaaactatcaaaatctcataattaatttatttttccttttcctcaaccgtgaaacggaaaattgagagaagaggagt |
318 |
Q |
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| T |
5523451 |
attgcatgcgcgtaacaaactacaaaactatcaaaatctcataattaatttatttttccttttcctcaacagtgaaacggaaaattgagagaagaggagt |
5523550 |
T |
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| Q |
319 |
gcgtgcctgaggaagtttgacggtggtggaagcggcaacgatggcgtaaccgaggagtttggaaatgagaggaagcaagcaatctttttcagggatgttt |
418 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5523551 |
gcgtgcctgagggagtttgacggtggtggaagcggcaacgatggcgtaaccgaggagtttggaaatgagaggaagcaagcaatctttttcagggatgttt |
5523650 |
T |
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| Q |
419 |
ccgttacgaagagatccaattgcacaactcaaatcgataccaagatattcca |
470 |
Q |
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| T |
5523651 |
ccgttacgaagagatccaattgcacaactcaaatcgataccaagatattcca |
5523702 |
T |
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