View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_low_10 (Length: 325)
Name: NF18510_low_10
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 12995266 - 12994963
Alignment:
| Q |
18 |
catgggcgtaagtttgtgtcattaaaacttcaaaaaagggattctcattattggttgtctcattaacaacttcaattcttgagcnnnnnnnaactttctt |
117 |
Q |
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| T |
12995266 |
catgggcataagtttgggtcattaaaacttcaaaaaagggattcacattattagttgtctcattaacaacttcaattcttgagctttttttaactttctt |
12995167 |
T |
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| Q |
118 |
aaccgtgtcttcaatgttcctacctgctttagagttcatttgttaagtactag---tataaaaaagaagaagtgattttactaaaaattatttgatatta |
214 |
Q |
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| T |
12995166 |
aaccgtgtcttcaatgttcctacctgcttttgagttcatttgttaagtactaaaaatactaaaaaaaagaagtgattttactaaaaattatttgatatta |
12995067 |
T |
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| Q |
215 |
aaaaggaaatcaaatgaagttctcacctgggaatttttgcttaagagtgtcaatatctatactcatttttctcttcccatttgttatcatttgagcttcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12995066 |
aaaaggaaatcaaatgaagttctcacctgggaatttttgcttaagagtgtcaatatctatactcatttttctcttcccatttgtcatcatttgagcttcc |
12994967 |
T |
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| Q |
315 |
tttg |
318 |
Q |
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|||| |
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| T |
12994966 |
tttg |
12994963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 12955162 - 12955114
Alignment:
| Q |
43 |
aacttcaaaaaagggattctcattattggttgtctcattaacaacttca |
91 |
Q |
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| T |
12955162 |
aacttcaaaaaaaggattctcattattggctctctcattaacagcttca |
12955114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 12886582 - 12886624
Alignment:
| Q |
25 |
gtaagtttgtgtcattaaaacttcaaaaaagggattctcatta |
67 |
Q |
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| T |
12886582 |
gtaagattgtgtcattataactacaaaaaagggattctcatta |
12886624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12923074 - 12923119
Alignment:
| Q |
22 |
ggcgtaagtttgtgtcattaaaacttcaaaaaagggattctcatta |
67 |
Q |
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||||||||| |||| ||||| |||||||||||||||||| |||||| |
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| T |
12923074 |
ggcgtaagtatgtgacattataacttcaaaaaagggattatcatta |
12923119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 12941505 - 12941460
Alignment:
| Q |
22 |
ggcgtaagtttgtgtcattaaaacttcaaaaaagggattctcatta |
67 |
Q |
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| T |
12941505 |
ggcgtaagattgtgtcattgtaatttcaaaaaagggattctcatta |
12941460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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