View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_low_12 (Length: 309)
Name: NF18510_low_12
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 39661028 - 39660736
Alignment:
| Q |
1 |
gtaacctctgatttgatgatgtcaaacgctggcttcccgagttcggttaatgtcgatgttgctttgtgatgtgaaaagtatatatcatcacctacgtgcg |
100 |
Q |
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| T |
39661028 |
gtaacctctgatttgatgatgtcaaacgctggcttcccgagttcggttaatgtcgatgttgcgttgtgatgtgaaaagtatatatcatcacctacgtg-- |
39660931 |
T |
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| Q |
101 |
gttgactattagtaatttttgtctgtttgatttcaattctgtaatttgatacacaaacaatttccagtattatttatcttttactacaacaatttccagt |
200 |
Q |
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| T |
39660930 |
gttaactattagtaatttttgtctgtttgatttcaattctgtaatttgatacacaaacaatttccagtattatttatcttttactacaacaatttccagt |
39660831 |
T |
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| Q |
201 |
attaattatcttttattgatgattatttgtataatatacatctaagtttatacctttttattttggtggctaaaggtttatcatcatcgctcattcat |
298 |
Q |
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| T |
39660830 |
attaattatcttttat---tgattatttgtataatctacatcaaagtttatacctttttattttggtggctaaaggtttatcatcgtcgctcattcat |
39660736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 39656372 - 39656299
Alignment:
| Q |
109 |
ttagtaatttttgtctgtttgatttcaattctgtaatttgatacacaaacaatttccagtattatttatctttta |
183 |
Q |
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| T |
39656372 |
ttagtaatttttgtcttttttatttcaattctgtaatttgatacac-aacaatttccagtattaattatctttta |
39656299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 217
Target Start/End: Complemental strand, 39656328 - 39656297
Alignment:
| Q |
186 |
acaacaatttccagtattaattatcttttatt |
217 |
Q |
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| T |
39656328 |
acaacaatttccagtattaattatcttttatt |
39656297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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