View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18510_low_17 (Length: 240)

Name: NF18510_low_17
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18510_low_17
NF18510_low_17
[»] chr8 (1 HSPs)
chr8 (18-229)||(3498574-3498785)
[»] chr6 (5 HSPs)
chr6 (121-181)||(7054704-7054764)
chr6 (40-116)||(22957791-22957868)
chr6 (40-116)||(23830524-23830601)
chr6 (131-180)||(15121353-15121402)
chr6 (193-229)||(7054775-7054811)
[»] chr7 (3 HSPs)
chr7 (121-181)||(29675975-29676037)
chr7 (137-172)||(32517389-32517424)
chr7 (193-229)||(29676048-29676084)
[»] chr3 (3 HSPs)
chr3 (121-182)||(53944675-53944736)
chr3 (96-172)||(11458388-11458466)
chr3 (139-167)||(3470090-3470118)
[»] chr2 (4 HSPs)
chr2 (83-120)||(663103-663140)
chr2 (139-172)||(40113677-40113710)
chr2 (96-124)||(23888188-23888216)
chr2 (96-124)||(23892264-23892292)
[»] chr1 (1 HSPs)
chr1 (83-124)||(9764746-9764788)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 3498574 - 3498785
Alignment:
Q  18 atctaatacgtgaatcgatttagatttagacacaaattcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3498574 atctaatacgtgaatcgatttagatttagacacaaattcttatccaaccaaaatagggttcatacgtgatagccataattgtatctatttggctctgata 3498673  T
Q  117 ccaattgaagaatctaatactcagccatagatcaatagatacaagttatagcatataattagtagcnnnnnnntaaataataaattgtgtaccttatata 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  3498674 ccaattgaagaatctaatactcaaccatagatcaatagatacaagttatagcatataattagtag-aaaaaaagaaataataaattgtgtaccttatata 3498772  T
Q  217 attggttgatgat 229  Q
    |||||||||||||    
T  3498773 attggttgatgat 3498785  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 7054704 - 7054764
Alignment:
Q  121 ttgaagaatctaatactcagccatagatcaatagatacaagttatagcatataattagtag 181  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  7054704 ttgaagaatctaatactcagtcatagatgaatagatacaaattatagcatataattagtag 7054764  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 22957791 - 22957868
Alignment:
Q  40 gatttagacacaaattcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgata 116  Q
    |||||| || || ||||| || |||||||||||||||| | || ||||| |||||||||||||||||||||| |||||    
T  22957791 gatttatactcagattctgattcaaccaaaatagggtttaaacatgataaccataattgtatctatttggctatgata 22957868  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 23830601 - 23830524
Alignment:
Q  40 gatttagacacaaattcttatccaaccaaaatagggttcatac-tgatagccataattgtatctatttggctctgata 116  Q
    |||||| || || ||||| || |||||||||||||||| | || ||||| |||||||||||||||||||||| |||||    
T  23830601 gatttatactcagattctgattcaaccaaaatagggtttaaacatgataaccataattgtatctatttggctatgata 23830524  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 15121353 - 15121402
Alignment:
Q  131 taatactcagccatagatcaatagatacaagttatagcatataattagta 180  Q
    |||||||||| ||||||| ||||||||||| ||||| ||| |||||||||    
T  15121353 taatactcagtcatagataaatagatacaaattataacatgtaattagta 15121402  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 7054775 - 7054811
Alignment:
Q  193 ataataaattgtgtaccttatataattggttgatgat 229  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  7054775 ataagaaattgtgtaccttatataattggttggtgat 7054811  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 29675975 - 29676037
Alignment:
Q  121 ttgaagaatctaatactcagccatagatc--aatagatacaagttatagcatataattagtag 181  Q
    ||||||||||||||||| || ||||||||  ||||||||||| ||||||||||||||||||||    
T  29675975 ttgaagaatctaatacttagtcatagatctcaatagatacaaattatagcatataattagtag 29676037  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 32517424 - 32517389
Alignment:
Q  137 tcagccatagatcaatagatacaagttatagcatat 172  Q
    |||||||| |||||||||||||||||||||||||||    
T  32517424 tcagccatggatcaatagatacaagttatagcatat 32517389  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 29676048 - 29676084
Alignment:
Q  193 ataataaattgtgtaccttatataattggttgatgat 229  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  29676048 ataagaaattgtgtaccttatataattggttggtgat 29676084  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 53944675 - 53944736
Alignment:
Q  121 ttgaagaatctaatactcagccatagatcaatagatacaagttatagcatataattagtagc 182  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||| |||| ||||||||||    
T  53944675 ttgaagaatctaatgctcagccatagatcaatatatacaaatcataacatagaattagtagc 53944736  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 11458466 - 11458388
Alignment:
Q  96 tgtatctatttggctctgataccaattgaagaa---tctaatactcagccatagatcaatagatacaagttatagcatat 172  Q
    |||||||||||||||||||||||||||||  ||   | ||| ||| ||||||||||| |||||||||| ||||| |||||    
T  11458466 tgtatctatttggctctgataccaattgataaaagttttaacacttagccatagatc-atagatacaaattataacatat 11458388  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 3470118 - 3470090
Alignment:
Q  139 agccatagatcaatagatacaagttatag 167  Q
    |||||||||||||||||||||||||||||    
T  3470118 agccatagatcaatagatacaagttatag 3470090  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 663140 - 663103
Alignment:
Q  83 tgatagccataattgtatctatttggctctgataccaa 120  Q
    |||||||||||| |||||||||||||||||||||||||    
T  663140 tgatagccataaatgtatctatttggctctgataccaa 663103  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 40113710 - 40113677
Alignment:
Q  139 agccatagatcaatagatacaagttatagcatat 172  Q
    ||||||| ||||||||||||||||||||||||||    
T  40113710 agccataaatcaatagatacaagttatagcatat 40113677  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 23888188 - 23888216
Alignment:
Q  96 tgtatctatttggctctgataccaattga 124  Q
    |||||||||||||||||||||||||||||    
T  23888188 tgtatctatttggctctgataccaattga 23888216  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 23892264 - 23892292
Alignment:
Q  96 tgtatctatttggctctgataccaattga 124  Q
    |||||||||||||||||||||||||||||    
T  23892264 tgtatctatttggctctgataccaattga 23892292  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 9764746 - 9764788
Alignment:
Q  83 tgatagccataa-ttgtatctatttggctctgataccaattga 124  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  9764746 tgatagccataaattgtatctaattggctctgataccaattga 9764788  T

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