View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_low_20 (Length: 215)
Name: NF18510_low_20
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_low_20 |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 5551 - 5737
Alignment:
| Q |
16 |
caagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaat |
115 |
Q |
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| T |
5551 |
caagaataagtaccttaactcaccataattatccacaaccaaatttgtcaatttgcaaaatgaatgttgattgtcaccccaaactttgttccaatttaat |
5650 |
T |
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| Q |
116 |
gagctcaaggtaatgatatccaaattaggaaatgcaaccaacatagaaccagaaggtgatttgctgctattgttgttgttcctatgc |
202 |
Q |
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| T |
5651 |
gagctcaaggtaaggatatccaaattaggaaatgcaaccaacatagaaccagagggtgatttactgctattgttgttgttcctatgc |
5737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 13291 - 13477
Alignment:
| Q |
16 |
caagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaat |
115 |
Q |
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| T |
13291 |
caagaataagtaccttaactcaccataattatccacaaccaaatttgtcaatttgcaaaatgaatgttgattgtcaccccaaactttgttccaatttaat |
13390 |
T |
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| Q |
116 |
gagctcaaggtaatgatatccaaattaggaaatgcaaccaacatagaaccagaaggtgatttgctgctattgttgttgttcctatgc |
202 |
Q |
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| T |
13391 |
gagctcaaggtaaggatatccaaattaggaaatgcaaccaacatagaaccagagggtgatttactgctattgttgttgttcctatgc |
13477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 8480403 - 8480592
Alignment:
| Q |
16 |
caagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaattta-- |
113 |
Q |
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| T |
8480403 |
caagaataagtactttaactcaccacaattatccacaacgaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaat |
8480502 |
T |
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| Q |
114 |
-atgagctcaaggtaatgatatccaaattaggaaatgcaaccaacatagaaccagaaggtgatttgctgctattgttgttgttcctatgc |
202 |
Q |
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| T |
8480503 |
gatgagctcaaggtaaggatatccaaattatgaaatgcaaccaacatagaatcagagggtgatttgctgctattgttgttgttcctatgc |
8480592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 19345097 - 19345244
Alignment:
| Q |
16 |
caagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
19345097 |
caagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgtaaaaggaatgttgattgtcaccccaaactttgctcaaatttaat |
19345196 |
T |
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| Q |
116 |
gagctcaaggtaatgatatccaaattaggaaatgcaaccaacatagaa |
163 |
Q |
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||||||||||||| | ||||||||||||||| ||||||| |||||||| |
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| T |
19345197 |
gagctcaaggtaagggtatccaaattaggaagtgcaacctacatagaa |
19345244 |
T |
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