View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18510_low_4 (Length: 425)
Name: NF18510_low_4
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 24274083 - 24273678
Alignment:
| Q |
1 |
acgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaattacacttgataattgtagaaaaatatgtatagctccaccttcattttt |
100 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||||||| ||| |||||||| | | ||||| |||||||||||||||||||| |||| |
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| T |
24274083 |
acgtagtaccttgtaaaaagtacaaagtactctgcttcacacctttcagaatcacacttga--acccttgaaaa-tatgtatagctccaccttcactttt |
24273987 |
T |
|
| Q |
101 |
aaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattcaatgtacataatttaccatca |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
24273986 |
aaaactaaaccccttcttgtccagaagactcaaagatataatattattcgttacgtgtggaacatgtctaacattgtttaatgtacataatttaccatca |
24273887 |
T |
|
| Q |
201 |
cgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattgaattgctcataggttgaaagtc |
298 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24273886 |
tgagaactaatcttgatagagctcatcccaaccattttgcaaacataactattggctataacaatattaccaccattgaattgctcataggttgaaagcc |
24273787 |
T |
|
| Q |
299 |
attctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttc |
398 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24273786 |
attctctcgtaggacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttc |
24273687 |
T |
|
| Q |
399 |
agaatgtgt |
407 |
Q |
| |
|
||||||||| |
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| T |
24273686 |
agaatgtgt |
24273678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 80 - 406
Target Start/End: Complemental strand, 30047574 - 30047246
Alignment:
| Q |
80 |
tatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattc |
179 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||| ||| |
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| T |
30047574 |
tataactccaccttcacctttgaaactaaacctcttcttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacatgtctaacttctttc |
30047475 |
T |
|
| Q |
180 |
aatgtacataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattga |
277 |
Q |
| |
|
| |||||| |||||||||||| |||| |||||||| ||||| | | ||||||| ||||| ||| |||||| ||||||| ||||||| ||||||| | |
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|
| T |
30047474 |
agtgtacaaaatttaccatcatgagtcctaatcttcatagatcacatcccaaccaccttgcagacagaactatgggccatatcaatatttccaccatcca |
30047375 |
T |
|
| Q |
278 |
attgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaac |
377 |
Q |
| |
|
| |||||||||| ||||| |||| |||| || ||||||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||| || |||| |
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|
| T |
30047374 |
actgctcataggatgaaaaccattatctcctaggacaaatatgataagacgctccggaatctagaacccacatatcggtataatgtgtgtgaccatcaac |
30047275 |
T |
|
| Q |
378 |
aactaaggtgatatcctcttcagaatgtg |
406 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
30047274 |
aactaaggtgatatcctcttcggaatgtg |
30047246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 85 - 369
Target Start/End: Original strand, 13417654 - 13417940
Alignment:
| Q |
85 |
ctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattcaatgt |
184 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||||||||| || | ||| |
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|
| T |
13417654 |
ctccaccttcacttttgaaactaaaccccttcttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacaggtctaacttcgttaagtgt |
13417753 |
T |
|
| Q |
185 |
acataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccattgaattgc |
282 |
Q |
| |
|
||| |||||||||| | |||| ||||| |||||||||| | ||||||| |||| |||||||||||||||||||||||||| | ||||| |||| | |
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|
| T |
13417754 |
acaaaatttaccattatgagtcctaattttgatagagcccatcccaaccaccttgctgacataactattggccataacaatattgcaaccatctaatttc |
13417853 |
T |
|
| Q |
283 |
tcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
369 |
Q |
| |
|
||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
13417854 |
tcataggatgaaaacaattctctcctaggacaaatatgataagacgcttcggaatctagaacccatacattagtgtaatgtgtgtga |
13417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 28706366 - 28706092
Alignment:
| Q |
77 |
atgtatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaacttta |
176 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||| | ||| ||||| |||||||||||||||||||||| |
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|
| T |
28706366 |
atgtataactccagcttcacctttgaaactaaaccccttcttgtccaaaagactcaaaaatatcagattcttcgtcatgtgtggaacatgtctaacttcg |
28706267 |
T |
|
| Q |
177 |
ttcaatgtacataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccat |
274 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||||||||||| | | ||||||| ||| | | |||||||||||||||||||||| ||||||| |
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|
| T |
28706266 |
ttcggtgtacataatttaccatcatgagtcgtaatcttgatagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccat |
28706167 |
T |
|
| Q |
275 |
tgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccaca |
349 |
Q |
| |
|
|||| |||||||||||||| |||||||||| || |||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
28706166 |
ccaatttctcataggttgaaaatcattctctcctaggacaaatatgataagatgctccggaatctagaacgcaca |
28706092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 13417573 - 13417622
Alignment:
| Q |
3 |
gtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
52 |
Q |
| |
|
|||||||||||||||||||| | ||||| | | ||||||||||||||||| |
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|
| T |
13417573 |
gtagtaccttgtagaaagtagagagtacatcgtttcacacctttcaaaat |
13417622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 148 - 407
Target Start/End: Original strand, 53471323 - 53471581
Alignment:
| Q |
148 |
tcgttatgtgtggaacatgtctaactttattcaatgtacataatttaccatcacgagtactaatcttgatagagctc-tccaaccattttgcaaacataa |
246 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| | ||| | || | | || || |
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|
| T |
53471323 |
tcgtcatgtgtggaacaagtctaactttgttcaatgtacataatttaccatcacgagtcctaatcttaatagagcacatcccaacaacct--aggcagaa |
53471420 |
T |
|
| Q |
247 |
ctattggccataacaatattaccaccattgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaaccc |
346 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||||||||| ||| ||||||| | || |||||||||||||||| ||| |||||| ||||||| |
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|
| T |
53471421 |
ctagcggccataacaatattgccaccatccaattgctcataggttaaaaaccattctcccctaggacaaatatgataagatgctccggaatccagaaccc |
53471520 |
T |
|
| Q |
347 |
acacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgt |
407 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||| |||||||||||| |||||||| |
|
|
| T |
53471521 |
acacatcagtgtaatgtgtgtggccatcaacaactaaggcgatatcctcttcggaatgtgt |
53471581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 77 - 407
Target Start/End: Original strand, 9009102 - 9009438
Alignment:
| Q |
77 |
atgtatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaa----catgtctaac |
172 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||| ||||| ||||||||||||||||| |||||| | ||| || | ||||||| || |||||||||| |
|
|
| T |
9009102 |
atgtataactccatcttcacctttcaaactgaaccctgtcttgtccaaaagactcggagatatcagattcttggacatgtgtgaaacatgcatgtctaac |
9009201 |
T |
|
| Q |
173 |
tttattcaatgtacataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattacca |
270 |
Q |
| |
|
|| |||| ||||||||||||||||||| |||| |||||||||||||||| | |||||||| ||||||||| |||| |||| |||| ||||||| ||| |
|
|
| T |
9009202 |
ttcgttcagtgtacataatttaccatcatgagtcctaatcttgatagagcccatcccaaccatcttgcaaacagaactgttggtcatagcaatattgcca |
9009301 |
T |
|
| Q |
271 |
ccattgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaa |
370 |
Q |
| |
|
|||| || | |||||| | ||||| |||||||||| || ||| |||||||||||| ||| ||||| | |||||||||||| |||||||||||||| |
|
|
| T |
9009302 |
ccatccaactactcatatgatgaaaatcattctctcctaggacgaatatgataagattctccagaatccaaaacccacacatcggtgtaatgtgtgtgac |
9009401 |
T |
|
| Q |
371 |
caacaacaactaaggtgatatcctcttcagaatgtgt |
407 |
Q |
| |
|
| |||||||||||| |||| ||| ||| |||||||| |
|
|
| T |
9009402 |
cttcaacaactaaggcgataaccttttcggaatgtgt |
9009438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 53471261 - 53471311
Alignment:
| Q |
2 |
cgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
52 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
53471261 |
cgtagtaccttgtagaaagtacagagtacccctcttcacacctttcaaaat |
53471311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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