View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_low_5 (Length: 367)
Name: NF18510_low_5
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 31225612 - 31225928
Alignment:
| Q |
16 |
cattagcaaggcctgttgtgttggnnnnnnnncttttctgttttggctaggcctagggagcctcttgggttctgtgcttggggttgcgggtatgcttgtg |
115 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
31225612 |
cattagcaaggcctgttgtgttggttttttttcttttctgttttggctaggcctagggagccccttgggttctgtgcttggggctgcgggtatgcttgtg |
31225711 |
T |
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| Q |
116 |
cctagtttgagctatggctgtgtaattgggtggcgattgtatcggattacaggctcataactcgctactgtcacagcctttagaatccttgtggagttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225712 |
cctagtttgagctatggctgtgtaattgggtggcgattgtatcggattacaggctcataactcgctactgtcacagcctttagaatccttgtggagttgc |
31225811 |
T |
|
| Q |
216 |
tagttggttttgttgttttgggcttcggtgtaccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggagttggcgtta |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31225812 |
tagttggttttgttggtttgggcttcggtgtaccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggggttggcgtta |
31225911 |
T |
|
| Q |
316 |
ataaattttgccgattc |
332 |
Q |
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||||||||||||||||| |
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| T |
31225912 |
ataaattttgccgattc |
31225928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 22851819 - 22851871
Alignment:
| Q |
279 |
tgtcgtccataccttgcgtcttgcggagttggcgttaataaattttgccgatt |
331 |
Q |
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| T |
22851819 |
tgtcgtccatatcttgcgtcttgcggggtcggcgttaataaatttttccgatt |
22851871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 29903466 - 29903517
Alignment:
| Q |
281 |
tcgtccataccttgcgtcttgcggagttggcgttaataaattttgccgattc |
332 |
Q |
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| T |
29903466 |
tcgtccattccttgcgccttgcggggttggcgctaataaattttgccgattc |
29903517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 31971873 - 31971783
Alignment:
| Q |
242 |
ggtgtaccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggagttggcg-ttaataaattttgccgattc |
332 |
Q |
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| T |
31971873 |
ggtgtaccgtctatatgcggcaccatttgtatc-ttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgattc |
31971783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 11378821 - 11378788
Alignment:
| Q |
281 |
tcgtccataccttgcgtcttgcggagttggcgtt |
314 |
Q |
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| T |
11378821 |
tcgtccataccttgcgtcttgcggggttggcgtt |
11378788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 332
Target Start/End: Complemental strand, 41310182 - 41309920
Alignment:
| Q |
69 |
tagggagcctcttgggttctgtgcttggggttgcgggtatgcttgtgcctagtttgagctatggctgtgtaattgggtggcgattgtatcggattacagg |
168 |
Q |
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||||| |||| ||||||||| || |||||| || |||| || |||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |
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| T |
41310182 |
tagggtgccttttgggttctttgtttggggctgagggtctgtttgtgcctagtttgagctatggctgtgtaattcggtggccattgtaccggattacagg |
41310083 |
T |
|
| Q |
169 |
ctcataactcgc--tactgtcacagcctttagaatccttgtggagttgctagttggttttgttgttttgggcttcggtgtaccgtctatatatggcacct |
266 |
Q |
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| T |
41310082 |
ctcataacttgctatactgtcacagtttttgggttccttgtggag----gagtctgttatttcgttttggggttgggtgtactctctatatgcggcatct |
41309987 |
T |
|
| Q |
267 |
tttatattgttatgtcgtccataccttgcgtcttgcggagttggcg-ttaataaattttgccgattc |
332 |
Q |
| |
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||| ||| ||||||| || ||||||| ||||||||| ||||||| |||||||||||||| ||||| |
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| T |
41309986 |
tttgtatctttatgtcatctataccttacgtcttgcgaggttggcgtttaataaattttgctgattc |
41309920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 24189903 - 24189981
Alignment:
| Q |
112 |
tgtgcctagtttgagctatggctgtgtaattgggtggcgattgtatcggattacaggctcataactcgctactgtcaca |
190 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |||| | |||||||||||| ||||||| ||| |||||||| |
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| T |
24189903 |
tgtgactagtttgagctatggctgtgtaatttggtggtgatttgaccggattacaggcacataacttgcttctgtcaca |
24189981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 9074573 - 9074501
Alignment:
| Q |
117 |
ctagtttgagctatggctgtgtaattgggtggcgattgtatcggattacaggctcataactcgctactgtcac |
189 |
Q |
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||||||| |||||||||| ||||||| ||||| | | | | |||||||||||||||||| | ||||||||||| |
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| T |
9074573 |
ctagttttagctatggctttgtaattcggtggtgttagaaccggattacaggctcataatttgctactgtcac |
9074501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 37158687 - 37158735
Alignment:
| Q |
281 |
tcgtccataccttgcgtcttgcggagttggcgttaataaattttgccga |
329 |
Q |
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| T |
37158687 |
tcgtccataccttgcgtcttgcggggatggcgtttataatatttgccga |
37158735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 14437005 - 14436934
Alignment:
| Q |
242 |
ggtgtaccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggagttggcgtt |
314 |
Q |
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| T |
14437005 |
ggtgtaccgtctatatgcggcaccatttgtatc-ttgtttcgtccataccttgcgtcttgcggggatggcgtt |
14436934 |
T |
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