View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_low_8 (Length: 334)
Name: NF18510_low_8
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 14110475 - 14110295
Alignment:
| Q |
7 |
taggatgcatgattgtaaaggaaaa-atccaagaaagccattatttatgcacttcaaatgacttctatttgaaagaaacaaacatttgagtgtgcatacc |
105 |
Q |
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| T |
14110475 |
taggatgcatgattgtaaaggaaaagatccaagaaagccattatttatgcacttcaaatgacttctatttgaaagaaacaaatatttgagtatgcatacc |
14110376 |
T |
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| Q |
106 |
ttaattatcaaatattcatatttgtttctctcataaaaaacctacgctttgatattgatttagttatttcaataaagacac |
186 |
Q |
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| T |
14110375 |
ttaattatcaaatattcatatttgtttctcccataaaaaacctacacttcgatattgatttagttatttcaataaagacac |
14110295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 14110248 - 14110139
Alignment:
| Q |
189 |
ctatttactactgtgcacatgatgactagtatagaaaatggaagaggccaacacattgggaggtgctaaatacttccagtttgtccc-ctgtaaaacaaa |
287 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||| | ||||||||| |
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| T |
14110248 |
ctatttactattatgcacatgatgactagtatagaaaatggaagaggccaacacatt-ggaggtgctaaatagtcctagtttgtcccggtataaaacaaa |
14110150 |
T |
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| Q |
288 |
caatacaattt |
298 |
Q |
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| T |
14110149 |
caatacaattt |
14110139 |
T |
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