View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18511_high_10 (Length: 290)
Name: NF18511_high_10
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 42806805 - 42806574
Alignment:
| Q |
6 |
accatcagtatacacaaagaatgcaaaaaa-tcaattcaagatttgaaacgagtaagctttattaaagacatttcttatcgtcacttaagaaagagcacg |
104 |
Q |
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| T |
42806805 |
accatcagtatacacaaagaatgcaaaaaaatcaattcaagatttgaaacgagtaagctttattaaagacatttcttatcgtcacttaagaaagagcacg |
42806706 |
T |
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| Q |
105 |
tgatccaaattaataattaatagtaatcnnnnnnnnaaaaggaatgattaatattgttatgtactgatgcaacatgtatatggtccagtaccagccactc |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42806705 |
tgatccaaattaataattaatagtaatc-tttttttaaaaggaatgattaatattgttatgtactgatgcaacatgtatatggtccagtaccagccactc |
42806607 |
T |
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| Q |
205 |
gtgctttagcataaaggacgtgttataatgttg |
237 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42806606 |
gtgctttagcataaaggacgtgttataatgttg |
42806574 |
T |
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