View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18511_high_3 (Length: 491)
Name: NF18511_high_3
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 7163069 - 7163523
Alignment:
| Q |
16 |
atataagatgtttatggttgctttaaaaatattgtagcgagtgataaagaaaagaataccgagcagggtgttggttttgtgaattctctttgtgtagaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7163069 |
atataagatgtttatggttgctttaaaaatattgtagcgagtgataaagaaaagaataccgagcagggtgttggttttgtgaattctctttgtgtagaga |
7163168 |
T |
|
| Q |
116 |
gtattcatactcaagtttgggagagttgttttatcctaatgacgacaaggcaagaaagaattgctgcaccgttaaggtagagtgacaaaacgtcttaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7163169 |
gtattcatactcaagtttgggagagttgttttatcctaatgacgacaaggtaagaaagaattgctgcaccgttaaggtagagtgacaaaacgtcttaaaa |
7163268 |
T |
|
| Q |
216 |
agagtgacttagtccacgactcagattcaaattttttatctaacaaattacttatgttgaactttgannnnnnngtaaatataatttcaagtcttcgata |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
7163269 |
agagtgacttagtccacgactcagactcaaattttttatctaataa--tacttatgttcaactttgatttttttgtaaatataatttcaagtcttcgata |
7163366 |
T |
|
| Q |
316 |
gatgcaacaacaatttcaagagtttaagaattgttccaacaatttgtcatctcaactgaataatagtggtggaattcaaaaattgatgcatcaaatctag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
7163367 |
gatgcaacaacaatttcaagagtttaagaattgttccaacagtttgtcatcacaactgaataatagtggtggaatttataaattgatgcatcaaatctag |
7163466 |
T |
|
| Q |
416 |
ttgaacattcatccaattttaacaagcattgaccatatcattatatgcaccattgca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
7163467 |
ttgaacattcatccaattttaacaagcattaactatatcattatatgcaccattgca |
7163523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 12703800 - 12703866
Alignment:
| Q |
83 |
gtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttat |
149 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
12703800 |
gtgttggtttggtgaattctctttgtgcagagagtattcatacttaagtttggaagggttgttttat |
12703866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 48517825 - 48517666
Alignment:
| Q |
80 |
agggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttatcctaatgacgacaaggcaagaaagaattgc |
179 |
Q |
| |
|
||||||||||||| | || || |||||||| | |||||| ||||||| ||||||| || | ||||||||||| |||||| |||||||||||| || |
|
|
| T |
48517825 |
agggtgttggtttggagagttttctttgtgcaaagagtagtcatacttaagtttgaaagggctgttttatcctggggacgacgaggcaagaaagatctgt |
48517726 |
T |
|
| Q |
180 |
tgcaccgttaaggtagagtgacaaaacgtcttaaaaagagtgacttagtccacgactcag |
239 |
Q |
| |
|
||||| || ||| |||| || ||||||||||| |||| ||| |||||| |||||||| |
|
|
| T |
48517725 |
tgcacaattcaggcagagccgcagaacgtcttaaagagagcgacctagtccgcgactcag |
48517666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 12704914 - 12704970
Alignment:
| Q |
300 |
tttcaagtcttcgatagatgcaacaacaatttcaagagtttaagaattgttccaaca |
356 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| ||| ||| ||||| |||||||||| |
|
|
| T |
12704914 |
tttcaagtgttcgacagatgcaacaactatttaaagtgttcaagaaatgttccaaca |
12704970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 4115702 - 4115763
Alignment:
| Q |
296 |
ataatttcaagtcttcgatagatgcaacaacaatttcaagagtttaagaattgttccaacaa |
357 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| ||| | ||||| |||||||| |
|
|
| T |
4115702 |
ataatttcaattgttcgatagatgcaacaacaatttcaagtgttcgaaaattgctccaacaa |
4115763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 19488921 - 19488985
Alignment:
| Q |
296 |
ataatttcaagtcttcgatagatgcaacaacaatttcaagagtttaagaattgttccaacaattt |
360 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| || ||| ||||| |||| ||||||||| |
|
|
| T |
19488921 |
ataatttcaagtgttcgacagatgcaacaacaatttttagtgttcaagaaatgtttcaacaattt |
19488985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 14918423 - 14918363
Alignment:
| Q |
296 |
ataatttcaagtcttcgatagatgcaacaacaatttcaagagtttaagaattgttccaaca |
356 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||| ||| ||| ||||| |||||||||| |
|
|
| T |
14918423 |
ataattccaagtgttcgatagatgcagcaacaatttaaagtgttcaagaaatgttccaaca |
14918363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 37075569 - 37075516
Alignment:
| Q |
81 |
gggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttg |
134 |
Q |
| |
|
|||||||||||| |||| ||||||||||| | |||||| ||||||| ||||||| |
|
|
| T |
37075569 |
gggtgttggtttggtgagttctctttgtgcatagagtactcatacttaagtttg |
37075516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University