View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18511_high_6 (Length: 406)
Name: NF18511_high_6
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_high_6 |
 | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 41866021 - 41865633
Alignment:
| Q |
1 |
tttgtaataataagatggagctagtatagaaatctaatagcgaataaaaaataatatctaatagtgataccatttgaataagtcttttcttgatgctaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41866021 |
tttgtaataataagatggagctagtatagaaatctaatagcgaataaaaaataatatctagtagtgataccatttgaataagtcttttcttgatgctaac |
41865922 |
T |
|
| Q |
101 |
atcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgcaacgatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41865921 |
atcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatagagtattggctctggtgcaacgatcc |
41865822 |
T |
|
| Q |
201 |
ctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagtttattatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
41865821 |
ctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtggctctaatgttcaaagtttattatc |
41865722 |
T |
|
| Q |
301 |
tgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatg |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41865721 |
tgagcatagttaaagctggaacgcgcctcttgttcaacagatttttagtaacgacatagctgaaaaaattatgcatacgcccttgtatg |
41865633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 79 - 389
Target Start/End: Complemental strand, 17207584 - 17207274
Alignment:
| Q |
79 |
taagtcttttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagt |
178 |
Q |
| |
|
|||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||| ||||||| | | ||| ||||| |||||||| |
|
|
| T |
17207584 |
taagtcctttcttgatgctagcattggtcgcaatccgagttatgtttggcggagcattctacgttcccttttcattgttcatggtggagcaagatggagc |
17207485 |
T |
|
| Q |
179 |
attggctctggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgact |
278 |
Q |
| |
|
||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
17207484 |
attggctctggtgcaacaatccctattcttcatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttatatgttcgtgatt |
17207385 |
T |
|
| Q |
279 |
ctaatgttcaaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatac |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| | |||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
17207384 |
ttaatgttcaaagtttattatctgagcatagtaaaagtcggaacacgcctcttgttcaatagatttttagtaacaacatagctgaaacaatattgcatac |
17207285 |
T |
|
| Q |
379 |
acccttgtatg |
389 |
Q |
| |
|
|||| |||||| |
|
|
| T |
17207284 |
acccatgtatg |
17207274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 76 - 389
Target Start/End: Complemental strand, 12528058 - 12527745
Alignment:
| Q |
76 |
gaataagtcttttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatgg |
175 |
Q |
| |
|
|||||| || ||||| |||| ||||| |||||||||||||||||||||||| |||||||| | |||||||| || ||| | ||||| ||||| |||||| |
|
|
| T |
12528058 |
gaataaatcctttctcaatgccaacattggtcacaatccgagttatgtttggtggagcattttacgttcccgctttattgtgcgtggtggagcaagatgg |
12527959 |
T |
|
| Q |
176 |
agtattggctctggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtg |
275 |
Q |
| |
|
|| || || |||||||||| |||| ||| ||| |||||||||||||| ||||||||||||| |||||||||||||| | ||| ||| ||||||||| || |
|
|
| T |
12527958 |
agcatcggttctggtgcaaatatccttattcttgatgcaccatggctgactaatggcgagtctattgatggtaacatagttggaggtctttatgttcatg |
12527859 |
T |
|
| Q |
276 |
actctaatgttcaaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgca |
375 |
Q |
| |
|
| | ||||||||| | ||||| | |||||| || | || ||||||| ||||||||||||| | | ||||||||| ||||||| |||| ||| |||| |
|
|
| T |
12527858 |
atttcaatgttcaacgcttatttttagagcatggtaagagttggaacgtgcctcttgttcaacagaattttagtaatgacatagttgaagcaatcttgca |
12527759 |
T |
|
| Q |
376 |
tacacccttgtatg |
389 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
12527758 |
tacgcccctgtatg |
12527745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 86 - 364
Target Start/End: Original strand, 14484188 - 14484466
Alignment:
| Q |
86 |
tttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggct |
185 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||| ||||||| ||| | ||||||||||||||| |||| || ||||| || ||||||||||||| |
|
|
| T |
14484188 |
tttcttcatgctaccattggtcacaatccgagttatgttgggcggagtattttacgttcccgtttcattgtccgaggcggagcaaggtggagtattggct |
14484287 |
T |
|
| Q |
186 |
ctggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgt |
285 |
Q |
| |
|
|||| || || |||||||| ||| | |||||||||||||||| || ||||| || |||||||||| |||| |||| |||| | | ||| | || ||| |
|
|
| T |
14484288 |
ctggggcgactatccctattcttgacacaccatggctggctaacggtgagtctatcaatggtaacatccctggaggttcttatatccatgattttactgt |
14484387 |
T |
|
| Q |
286 |
tcaaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaa |
364 |
Q |
| |
|
|||| |||||| ||| | ||| || | || ||||| | ||||||||||||| | || |||||||| |||||||||||| |
|
|
| T |
14484388 |
ccaaaatttattgtctcaacatggtaagagttggaatgagcctcttgttcaacagatgtttagtaatgacatagctgaa |
14484466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 93 - 364
Target Start/End: Complemental strand, 13701924 - 13701653
Alignment:
| Q |
93 |
atgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgc |
192 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||| |||| | ||||||| || ||| | |||| ||||| |||||||| || | ||||||| |
|
|
| T |
13701924 |
atgccaacattggtcacaatccgagttatgtttgacggaacattttacgttccctctttattgtgtgtggtggagcaagatggagcatcgattctggtgt |
13701825 |
T |
|
| Q |
193 |
aacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagt |
292 |
Q |
| |
|
|| |||||||| || ||||||||||||||| |||||| |||| ||||||| |||||| ||||| ||| |||||||| |||| | ||||||||||| |
|
|
| T |
13701824 |
aaatatccctattattgatgcaccatggctggataatggtgagtttattgatgataacatagctggaggtctttatgtttgtgatttcaatgttcaaagc |
13701725 |
T |
|
| Q |
293 |
ttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaa |
364 |
Q |
| |
|
|||||||| |||||| || | || ||||| | |||||| |||||| | ||||||||||| |||||||||||| |
|
|
| T |
13701724 |
ttattatcggagcatggtaagagttggaatgtgcctctggttcaacagatttttagtaatgacatagctgaa |
13701653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 93 - 364
Target Start/End: Complemental strand, 27011144 - 27010873
Alignment:
| Q |
93 |
atgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgc |
192 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| ||| | ||| |||| || ||| | ||||| ||||| |||||||| ||||| | |||||| |
|
|
| T |
27011144 |
atgccaacataggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcattggttttggtgc |
27011045 |
T |
|
| Q |
193 |
aacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagt |
292 |
Q |
| |
|
|| || ||||| ||| ||||||| |||||||| ||||||||||| || |||||||| || |||| || |||||||||||||| | ||||||||||| |
|
|
| T |
27011044 |
aaatattcctattcttgatgcaccgtggctggccaatggcgagtctatagatggtaatatagctgaaggcttttatgttcgtgatttcaatgttcaaagc |
27010945 |
T |
|
| Q |
293 |
ttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaa |
364 |
Q |
| |
|
|||||||| || ||| | | || ||||||| |||||| || ||| | ||||||||| |||||||||||| |
|
|
| T |
27010944 |
ttattatcggatcatggcaagagttggaacgtgcctctagtccaacaaatttttagtgctgacatagctgaa |
27010873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 389
Target Start/End: Original strand, 33479190 - 33479392
Alignment:
| Q |
187 |
tggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgtt |
286 |
Q |
| |
|
|||||| || |||||||| ||| |||||||||| ||| ||||||| ||||| ||||||||| |||| ||| || || |||||| | || | |||||| |
|
|
| T |
33479190 |
tggtgcgactatccctattcttgatgcaccatgactgtctaatggtgagtctattgatggtcacatcattggaggcttctatgtttgcgattttaatgtc |
33479289 |
T |
|
| Q |
287 |
caaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgt |
386 |
Q |
| |
|
||||| || ||| ||||||| || | || ||||||| ||||||||||| | | ||||||||||| ||||||||||| |||| |||||||| || ||| |
|
|
| T |
33479290 |
caaagcttgttacatgagcatggtaagagttggaacgagcctcttgttcgacagatttttagtaatgacatagctgatgcaattttgcatacaaccctgt |
33479389 |
T |
|
| Q |
387 |
atg |
389 |
Q |
| |
|
||| |
|
|
| T |
33479390 |
atg |
33479392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 93 - 364
Target Start/End: Original strand, 17177539 - 17177810
Alignment:
| Q |
93 |
atgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgc |
192 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| ||| | ||| |||| || ||| | ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
17177539 |
atgccaacattggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcgttggctctggtgc |
17177638 |
T |
|
| Q |
193 |
aacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagt |
292 |
Q |
| |
|
| || ||||| ||| ||||||||||| |||| |||||| |||| || |||||||| || |||| || |||||||||||||| | ||||||||||| |
|
|
| T |
17177639 |
atatattcctattcttgatgcaccatggttggccaatggcaagtctatagatggtaaaatagctgaaggcttttatgttcgtgatttcaatgttcaaagc |
17177738 |
T |
|
| Q |
293 |
ttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaa |
364 |
Q |
| |
|
|||||||| || ||| | | || ||||||| |||||| || ||| | |||||||||| |||||||||||| |
|
|
| T |
17177739 |
ttattatcggatcatggcaagagttggaacgtgcctctagtccaacagatttttagtactgacatagctgaa |
17177810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 38490324 - 38490176
Alignment:
| Q |
101 |
atcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgcaacgatcc |
200 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||| ||||| |||| || ||| | ||||| || ||| | ||||||||||| ||| || || || | |
|
|
| T |
38490324 |
atcggtcacaatccgagttacgtgtggcgtagcattttgcgtgcccgatttattgtgcgtggtggggctcgttggagtattggttctagtatgacaattc |
38490225 |
T |
|
| Q |
201 |
ctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaa |
249 |
Q |
| |
|
| ||||| | |||||||||||| |||| || |||| ||||||||||| |
|
|
| T |
38490224 |
caatcctcgacgcaccatggctgtctaacggtgagtttattgatggtaa |
38490176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 190
Target Start/End: Original strand, 42807 - 42893
Alignment:
| Q |
104 |
ggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggt |
190 |
Q |
| |
|
||||| || ||||||||||| ||||| | |||||| ||| ||||||| ||| ||||||| || ||| ||||||||||||| |||||| |
|
|
| T |
42807 |
ggtcataacccgagttatgtgtggcgcaacattcttcgtgcccgttttattgtccgtggtggcgctcgatggagtattgggtctggt |
42893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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