View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18511_high_8 (Length: 313)

Name: NF18511_high_8
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18511_high_8
NF18511_high_8
[»] chr5 (9 HSPs)
chr5 (16-263)||(34306972-34307217)
chr5 (131-209)||(33469291-33469369)
chr5 (131-214)||(22693150-22693233)
chr5 (134-209)||(26604742-26604817)
chr5 (275-313)||(2412152-2412190)
chr5 (275-313)||(606218-606256)
chr5 (275-313)||(14318383-14318421)
chr5 (275-313)||(22648734-22648772)
chr5 (275-311)||(10407527-10407563)
[»] chr3 (3 HSPs)
chr3 (104-221)||(3163250-3163371)
chr3 (275-313)||(26279609-26279647)
chr3 (275-313)||(50258624-50258662)
[»] chr7 (6 HSPs)
chr7 (131-210)||(1321938-1322016)
chr7 (137-209)||(28008246-28008318)
chr7 (275-313)||(2611262-2611300)
chr7 (275-313)||(6765681-6765719)
chr7 (275-313)||(12419495-12419533)
chr7 (275-313)||(27237423-27237461)
[»] chr4 (7 HSPs)
chr4 (104-210)||(12587115-12587224)
chr4 (275-313)||(10042000-10042038)
chr4 (275-313)||(24614022-24614060)
chr4 (275-313)||(30507122-30507160)
chr4 (275-313)||(39655254-39655292)
chr4 (275-313)||(52468355-52468393)
chr4 (277-313)||(36118460-36118496)
[»] chr6 (4 HSPs)
chr6 (112-210)||(12026573-12026673)
chr6 (112-210)||(12033493-12033593)
chr6 (275-313)||(30121829-30121867)
chr6 (280-313)||(30832530-30832563)
[»] chr2 (10 HSPs)
chr2 (104-206)||(37058398-37058502)
chr2 (131-214)||(39091968-39092051)
chr2 (131-209)||(20530409-20530487)
chr2 (275-313)||(13800545-13800583)
chr2 (275-313)||(16097071-16097109)
chr2 (275-313)||(21665701-21665739)
chr2 (275-313)||(22727458-22727496)
chr2 (275-313)||(24035546-24035584)
chr2 (275-313)||(38400861-38400899)
chr2 (275-313)||(42029208-42029246)
[»] chr1 (2 HSPs)
chr1 (131-207)||(7795138-7795214)
chr1 (275-312)||(45758570-45758607)
[»] chr8 (8 HSPs)
chr8 (131-211)||(32109595-32109675)
chr8 (135-194)||(15169821-15169880)
chr8 (275-313)||(5973108-5973146)
chr8 (275-313)||(7944523-7944561)
chr8 (275-313)||(8646269-8646307)
chr8 (275-313)||(9108557-9108595)
chr8 (275-313)||(15167416-15167454)
chr8 (112-194)||(12785834-12785920)
[»] scaffold0591 (1 HSPs)
scaffold0591 (155-210)||(2154-2209)
[»] scaffold0294 (1 HSPs)
scaffold0294 (105-174)||(510-583)
[»] scaffold1590 (1 HSPs)
scaffold1590 (275-313)||(259-297)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 34306972 - 34307217
Alignment:
Q  16 atcacatagacgatataacattcctttaagcatgtgtttgctttcacggaggaaagagccacagacgcgagatattatgaagctacaaaaaatgtaaatg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34306972 atcacatagacgatataacattcctttaatcatgtgtttgctttcacggaggaaagagccacagacgcgagatattatgaagctacaaaaaatgtaaatg 34307071  T
Q  116 gtaatggattatgaatacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattgagatttt 215  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||     
T  34307072 gtaatggattatgaatacttgttattgaagtggtggctgatttgaatttgaagaaatttggtgttagatgatttgagtc--ttttagagattgagatttg 34307169  T
Q  216 taaaattaaagaaacaagttcctgtctcagctataaaacaaaaacgta 263  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  34307170 taaaattaaagaaacaagttcctgtctcagctataaaataaaaacgta 34307217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 33469291 - 33469369
Alignment:
Q  131 tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattga 209  Q
    |||| ||||||| |||||||||| |||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  33469291 tactagttattgtagtggtggctgatttgaatttgacgaaatttggtgttggatgatttgagagagttttagagattga 33469369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 22693150 - 22693233
Alignment:
Q  131 tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattgagattt 214  Q
    |||||||||||   ||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  22693150 tacttgttattagggtggtggctgattagaatttgaagaaatttggtgttggatgatttgagagagttttagagattgggattt 22693233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 26604742 - 26604817
Alignment:
Q  134 ttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattga 209  Q
    ||||||||| |||| ||||| |||||||||| |  |||||||||||| |||||||||||||| | |||||||||||    
T  26604742 ttgttattgtagtgatggctgatttgaattttataaaatttggtgttggatgatttgagagaattttagagattga 26604817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 2412190 - 2412152
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  2412190 aagaacaatgttctatttaaattttttaaaaaataaata 2412152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 606256 - 606218
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  606256 aagaacaatgttctatttaaattttttaaaagataaata 606218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 14318383 - 14318421
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  14318383 aagaacaatgttctatttaaattttttaaaagataaata 14318421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 22648734 - 22648772
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  22648734 aagaacaatgttctatttaaattttttaaaagataaata 22648772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 10407563 - 10407527
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaa 311  Q
    |||||| |||||||||||||||||||||||| |||||    
T  10407563 aagaacaatgttctatttaaattttttaaaagataaa 10407527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 3163250 - 3163371
Alignment:
Q  104 aaaatgtaaatggtaatggattatgaatactt----gttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgt 199  Q
    ||||||||| ||||||||||||||||| ||||    |||||| ||||||||  | |||||||||||||||||| ||||||| |||||| ||||||||| |    
T  3163250 aaaatgtaattggtaatggattatgaaaacttccttgttattaaagtggtgattgatttgaatttgaagaaatgtggtgttggatgatatgagagagttt 3163349  T
Q  200 tagagattgagatttttaaaat 221  Q
    ||||||||||||||| ||||||    
T  3163350 tagagattgagatttgtaaaat 3163371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 26279647 - 26279609
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  26279647 aagaacaatgttctatttaaattttttaaaagataaata 26279609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 50258624 - 50258662
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  50258624 aagagcgatgttctatttatattttttaaaaaataaata 50258662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 1321938 - 1322016
Alignment:
Q  131 tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattgag 210  Q
    |||||||||||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  1321938 tacttgttattgtagtggtggcttatttgaacttgaagaaatttgatgttggatgatttgagagagt-ttagagattgag 1322016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 28008318 - 28008246
Alignment:
Q  137 ttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattga 209  Q
    |||||| |||||||||| ||||||||| ||  |||||||||||| |||||||||||||| | |||||||||||    
T  28008318 ttattgtagtggtggctgatttgaattcgacaaaatttggtgttggatgatttgagagaattttagagattga 28008246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 2611262 - 2611300
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  2611262 aagaacaatgttctatttaaattttttaaaagataaata 2611300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 6765681 - 6765719
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  6765681 aagaacaatgttctatttaaattttttaaaagataaata 6765719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 12419495 - 12419533
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  12419495 aagaacaatgttctatttaaattttttaaaagataaata 12419533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 27237423 - 27237461
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  27237423 aagaacaatgttctatttaaattttttaaaagataaata 27237461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 12587224 - 12587115
Alignment:
Q  104 aaaatgtaaatggtaatggattatgaa----tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgt 199  Q
    ||||||| |||||||||||||||||||    |||||||||||||||||||| || |||||||||||||||||| ||||||| |||| |||||||  || |    
T  12587224 aaaatgttaatggtaatggattatgaaaacttacttgttattgaagtggtgtctgatttgaatttgaagaaatatggtgttggatgttttgagattgt-t 12587126  T
Q  200 tagagattgag 210  Q
    |||||||||||    
T  12587125 tagagattgag 12587115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 10042000 - 10042038
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  10042000 aagaacaatgttctatttaaatttttaaaaaaataaata 10042038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 24614060 - 24614022
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  24614060 aagaacaatgttctatttaaattttttaaaagataaata 24614022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 30507122 - 30507160
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  30507122 aagaacaatgttctatttaaattttttaaaagataaata 30507160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 39655254 - 39655292
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  39655254 aagaacaatgttctatttaaattttttaaaagataaata 39655292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 52468393 - 52468355
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  52468393 aagaacaatgttctatttaaattttttaaaagataaata 52468355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 36118460 - 36118496
Alignment:
Q  277 gaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||| |||||||||||||||||||||||| |||||||    
T  36118460 gaacaatgttctatttaaattttttaaaagataaata 36118496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 12026673 - 12026573
Alignment:
Q  112 aatggtaatggattatgaa----tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagatt 207  Q
    ||||||||||||||||| |    |||||||||||||||||||| || || |||||||||||| |||||||||| |||||||  ||||||| |||||||||    
T  12026673 aatggtaatggattatggaaacttacttgttattgaagtggtgactgatatgaatttgaagatatttggtgttggatgatt--agagagttttagagatt 12026576  T
Q  208 gag 210  Q
    |||    
T  12026575 gag 12026573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 12033593 - 12033493
Alignment:
Q  112 aatggtaatggattatgaa----tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagatt 207  Q
    ||||||||||||||||| |    |||||||||||||||||||| || || |||||||||||| |||||||||| |||||||  ||||||| |||||||||    
T  12033593 aatggtaatggattatggaaacttacttgttattgaagtggtgactgatatgaatttgaagatatttggtgttggatgatt--agagagttttagagatt 12033496  T
Q  208 gag 210  Q
    |||    
T  12033495 gag 12033493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 30121867 - 30121829
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  30121867 aagaacaatgttttatttaaattttttaaaaaataaata 30121829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 30832530 - 30832563
Alignment:
Q  280 cgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||||||||||| |||||||||||||||||||    
T  30832530 cgatgttctatttacattttttaaaaaataaata 30832563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 37058502 - 37058398
Alignment:
Q  104 aaaatgtaaatggtaatggattatgaa----tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgt 199  Q
    ||||||| |||||||||||||||||||    |||||||| |||| |||  |||| ||||||||||||||| |||||||||| |||||||||||||||| |    
T  37058502 aaaatgtcaatggtaatggattatgaaaacttacttgtttttga-gtga-ggctgatttgaatttgaagagatttggtgttggatgatttgagagagttt 37058405  T
Q  200 tagagat 206  Q
    |||||||    
T  37058404 tagagat 37058398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 39091968 - 39092051
Alignment:
Q  131 tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattgagattt 214  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||| |||| | |||||||||||| | ||||||||||| ||||    
T  39091968 tacttgttattggagtggtgtctgatttgaatttgaaaaaatttgatgtttgttgatttgagagatttttagagattgatattt 39092051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 20530409 - 20530487
Alignment:
Q  131 tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattga 209  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||||| | | ||| || ||||| ||||| |||||    
T  20530409 tacttgttattgtagtggtggctgatttgaatttgatgaaatttggtgttggttaattggaaagagttttagatattga 20530487  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 13800545 - 13800583
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  13800545 aagaacaatgttctatttaaattttttaaaagataaata 13800583  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 16097109 - 16097071
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  16097109 aagaacaatgttctatttaaattttttaaaagataaata 16097071  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 21665701 - 21665739
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  21665701 aagaacaatgttctatttaaattttttaaaagataaata 21665739  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 22727458 - 22727496
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  22727458 aagaacaatgttctatttaaattttttaaaagataaata 22727496  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 24035546 - 24035584
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  24035546 aagaacaatgttctatttaaattttttaaaagataaata 24035584  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 38400899 - 38400861
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  38400899 aagaacaatgttctatttaaattttttaaaagataaata 38400861  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 42029246 - 42029208
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  42029246 aagaacaatgttctatttaaattttttaaaagataaata 42029208  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 7795138 - 7795214
Alignment:
Q  131 tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagatt 207  Q
    |||||||||||| |||||||| ||||||||||||||||||||| | |||| | |||||||||||||| | |||||||    
T  7795138 tacttgttattgtagtggtggattatttgaatttgaagaaattcgatgtttgttgatttgagagagtttcagagatt 7795214  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 45758607 - 45758570
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaat 312  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  45758607 aagaacaatgttctatttaaattttttaaaagataaat 45758570  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 32109595 - 32109675
Alignment:
Q  131 tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattgaga 211  Q
    |||||||||||| |||  || || |||||| ||||||||||||||||||| ||||||||||||||||  || |||||||||    
T  32109595 tacttgttattggagttttgcctgatttgagtttgaagaaatttggtgttggatgatttgagagagtaataaagattgaga 32109675  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 15169821 - 15169880
Alignment:
Q  135 tgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagag 194  Q
    |||||||| ||||||| || |||||||||||||||||| | ||||| |||||||||||||    
T  15169821 tgttattggagtggtgactgatttgaatttgaagaaatatagtgttggatgatttgagag 15169880  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 5973108 - 5973146
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  5973108 aagaacaatgttctatttaaattttttaaaagataaata 5973146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 7944523 - 7944561
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  7944523 aagaacaatgttttatttaaattttttaaaaaataaata 7944561  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 8646307 - 8646269
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  8646307 aagaacaatgttctatttaaattttttaaaagataaata 8646269  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 9108595 - 9108557
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  9108595 aagaacaatgttctatttaaattttttaaaagataaata 9108557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 15167416 - 15167454
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  15167416 aagaacaatgttctatttaaattttttaaaagataaata 15167454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 12785834 - 12785920
Alignment:
Q  112 aatggtaatggattatgaa----tacttgttattgaagtggtggcttatttgaatttgaagaaatttggtgttagatgatttgagag 194  Q
    ||||||||| |||||||||    |||||||||||  |||||||| | ||||||| |||| ||||||||| ||| ||| |||||||||    
T  12785834 aatggtaattgattatgaaaacttacttgttattcgagtggtgggtgatttgaacttgatgaaatttggggttggataatttgagag 12785920  T

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Target: scaffold0591 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 2209 - 2154
Alignment:
Q  155 atttgaatttgaagaaatttggtgttagatgatttgagagagtgttagagattgag 210  Q
    |||||||||| ||||||| || ||||||||||||||| ||||| ||||||||||||    
T  2209 atttgaatttaaagaaatatgatgttagatgatttgaaagagttttagagattgag 2154  T

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Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 583 - 510
Alignment:
Q  105 aaatgtaaatggtaatggattatgaatactt----gttattgaagtggtggcttatttgaatttgaagaaattt 174  Q
    |||||| ||||||||||||||||||| ||||    ||||||| ||||||| |  ||||||||||||||||||||    
T  583 aaatgtcaatggtaatggattatgaaaactttcttgttattggagtggtgaccgatttgaatttgaagaaattt 510  T

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Target: scaffold1590 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 259 - 297
Alignment:
Q  275 aagaacgatgttctatttaaattttttaaaaaataaata 313  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  259 aagaacaatgttctatttaaattttttaaaagataaata 297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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