View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18511_low_1 (Length: 612)
Name: NF18511_low_1
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 32315055 - 32314653
Alignment:
| Q |
18 |
actgattttgtggattttgttggccttctaatatttttgcgccgnnnnnnngttcttcaaaagttatctaaacgaatgatagtgtactccatttgaacat |
117 |
Q |
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| T |
32315055 |
actgattttgtggattttgttggccttccaatatttttgcaccgaaaaaaagttcttcaaaagttatctaatt-aatgatagtgtacttt-tttgaacat |
32314958 |
T |
|
| Q |
118 |
cttgatcacaccatattgatgaaatcggtgttgttgttactgcctctgt-----accaataaatgtgttcgacactgaacacatgttcaatctaaaatgt |
212 |
Q |
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| T |
32314957 |
cttgatcacaccatattgatgaaatcggtgttgttgttattgcctgtgtcacacaccaataaatgtgttcgacattgaacacatgttcaatctaaaatat |
32314858 |
T |
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| Q |
213 |
caatgcgacatagcttgtaa---caaacaaagacagattagagg-cttcatatattacacatacctagttgctactacatgcatgtttttgtttctaatt |
308 |
Q |
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| T |
32314857 |
caatgcgacatagcttgtaataacaaacaaagacagattagagggcttcatatattacacatac-tagttgctactacatgcatgtttttgtttctaatt |
32314759 |
T |
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| Q |
309 |
ggtgaaatactacattttatttgcttgtattcaagagaggatttagtttccttaaacaaatgtgaattggatgaatcctgtttgtagaaagcaaattcta |
408 |
Q |
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| T |
32314758 |
ggtgaaatactacattttatttgcttgtattcaagagaggatttagtttccttaaacaaatatgaattggatgaatcctgtttgtagaaagcaaattcta |
32314659 |
T |
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| Q |
409 |
gggtaa |
414 |
Q |
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|||||| |
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| T |
32314658 |
gggtaa |
32314653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 32314581 - 32314526
Alignment:
| Q |
198 |
ttcaatctaaaatgtcaatgcgacatagcttgtaacaaacaaagacagattagagg |
253 |
Q |
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| T |
32314581 |
ttcaatctaaaatgtatgtgctacatagcttataacaaacaaagacggattagagg |
32314526 |
T |
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