View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18511_low_11 (Length: 291)

Name: NF18511_low_11

Description: NF18511

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18511_low_11

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 176; E-Value: 7e-95

Query Start/End: Original strand, 19 - 198

Target Start/End: Complemental strand, 39678640 - 39678461

Alignment:

Q	19	attctgggctcttagcgtccctgcaaaattccttatatagaaaaataaactaagcatgcactttctgtatttgatgcactggtttgcttttttgatcatg	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39678640	attctgggctcttagcgtccctgcaaaattccttatatagaaaaataaactaagcatgcactttctgtattcgatgcactggtttgcttttttgatcatg	39678541	T

Q	119	aactgatttattctcaaggtgtatagaggaccttcagataaccacggtgtgctgcagaaatcgaatcaaatccctatttg	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39678540	aactgatttattctcaaggtgtatagaggaccttcagataaccacggtgtgctgcagaaatcgaatcaaatccctatttg	39678461	T

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Target: chr8; HSP #2

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 258 - 291

Target Start/End: Complemental strand, 39678326 - 39678293

Alignment:

Q	258	tttataatattgtttcgatcatattagaatatct	291	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39678326	tttataatattatttcgatcatattagaatatct	39678293	T

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