View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18511_low_13 (Length: 274)

Name: NF18511_low_13
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18511_low_13
NF18511_low_13
[»] chr5 (14 HSPs)
chr5 (1-186)||(34307362-34307547)
chr5 (129-189)||(606150-606210)
chr5 (138-189)||(2411913-2411964)
chr5 (137-182)||(15639277-15639322)
chr5 (128-186)||(2024868-2024926)
chr5 (67-132)||(26719207-26719272)
chr5 (67-132)||(26988951-26989016)
chr5 (139-186)||(26719124-26719171)
chr5 (139-186)||(26988868-26988915)
chr5 (70-132)||(10543392-10543454)
chr5 (143-189)||(34425735-34425781)
chr5 (67-132)||(11242649-11242714)
chr5 (67-132)||(15639160-15639225)
chr5 (135-187)||(40794552-40794604)
[»] chr2 (14 HSPs)
chr2 (65-127)||(21666036-21666098)
chr2 (129-187)||(37182482-37182540)
chr2 (67-132)||(11952944-11953009)
chr2 (68-132)||(12134363-12134426)
chr2 (128-186)||(16227599-16227657)
chr2 (130-185)||(11912977-11913032)
chr2 (130-189)||(37622549-37622608)
chr2 (137-187)||(38400620-38400670)
chr2 (137-189)||(21665928-21665980)
chr2 (76-112)||(24035887-24035923)
chr2 (138-184)||(11952839-11952885)
chr2 (67-124)||(29694087-29694144)
chr2 (69-129)||(21190927-21190987)
chr2 (69-129)||(30175524-30175584)
[»] chr1 (4 HSPs)
chr1 (67-132)||(39135060-39135125)
chr1 (138-189)||(26803784-26803835)
chr1 (137-189)||(10926171-10926223)
chr1 (144-189)||(39134950-39134995)
[»] chr3 (2 HSPs)
chr3 (68-132)||(23641461-23641525)
chr3 (137-184)||(26279366-26279413)
[»] chr4 (10 HSPs)
chr4 (138-189)||(52468115-52468166)
chr4 (72-132)||(15734807-15734867)
chr4 (128-189)||(40217047-40217110)
chr4 (67-132)||(40216866-40216931)
chr4 (70-112)||(27111747-27111789)
chr4 (129-182)||(24396757-24396810)
chr4 (128-189)||(39329631-39329692)
chr4 (138-186)||(36118687-36118735)
chr4 (134-186)||(37746950-37747002)
chr4 (133-161)||(50677268-50677296)
[»] chr8 (7 HSPs)
chr8 (75-177)||(41677414-41677516)
chr8 (67-132)||(25562011-25562076)
chr8 (138-186)||(34048938-34048986)
chr8 (67-114)||(8645917-8645964)
chr8 (67-132)||(5721428-5721493)
chr8 (137-189)||(15078583-15078635)
chr8 (137-189)||(15167641-15167693)
[»] chr7 (8 HSPs)
chr7 (135-185)||(20153024-20153074)
chr7 (67-132)||(12419823-12419888)
chr7 (133-186)||(23020712-23020765)
chr7 (128-189)||(23858888-23858949)
chr7 (133-189)||(26917909-26917965)
chr7 (65-127)||(7398157-7398219)
chr7 (141-186)||(27237653-27237698)
chr7 (68-124)||(18200997-18201053)
[»] scaffold0007 (1 HSPs)
scaffold0007 (139-189)||(231087-231137)
[»] scaffold0097 (1 HSPs)
scaffold0097 (68-132)||(38798-38862)
[»] chr6 (2 HSPs)
chr6 (70-112)||(2477934-2477976)
chr6 (132-189)||(20611611-20611668)
[»] scaffold1320 (1 HSPs)
scaffold1320 (137-189)||(1179-1231)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 34307547 - 34307362
Alignment:
Q  1 ccagcagcagttaattgccgccatcgtgagttaacttgtgttgcttaagtgacagataactgctaaggccggaccttggggtgtgcaagaagctcaatgg 100  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  34307547 ccagcagcagttaattgctgtcatcgtgagttaacttgcgttgcttaagtgacagataactgccaaggccggaccttggggtgcgcaagaagctcaatgg 34307448  T
Q  101 aaccgggcctcctcgaggtatgggcctcaaaattttcttattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34307447 aaccggacctcctcgaggtatgggcctcaaaattttcttattctctttctctctgataccacatgttccatcaccatcactccatc 34307362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 606150 - 606210
Alignment:
Q  129 aaaattttcttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||| |||||||||||||||| |||||||||||||  |||||||||||| |||||||||||    
T  606150 aaaaatttcttattctctttcactctgataccacacattccatcaccatcactccatcaga 606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 2411913 - 2411964
Alignment:
Q  138 ttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  2411913 ttattctctttctctttgataccacgtgttccatcaccatcactccatcaga 2411964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 15639277 - 15639322
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactc 182  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  15639277 cttattctctttctctctgataccacacgttccatcaccatcactc 15639322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 2024926 - 2024868
Alignment:
Q  128 caaaattttcttattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    ||||| || |||||||||||||||||||||||| |  ||||||||||||| ||||||||    
T  2024926 caaaaattccttattctctttctctctgataccgcgcgttccatcaccatcactccatc 2024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 26719272 - 26719207
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    |||||||||||||| |||| ||| ||||||| |||||||||| ||| | ||| |||||||||||||    
T  26719272 ggccggaccttgggatgtgtaaggagctcaaaggaaccgggcttccccaaggaatgggcctcaaaa 26719207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 26989016 - 26988951
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    |||||||||||||| |||| ||| ||||||| |||||||||| ||| | ||| |||||||||||||    
T  26989016 ggccggaccttgggatgtgtaaggagctcaaaggaaccgggcttccccaaggaatgggcctcaaaa 26988951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 26719171 - 26719124
Alignment:
Q  139 tattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| ||||    
T  26719171 tattctctttctctctgataccacgcgttccatcaccatcactgcatc 26719124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 26988915 - 26988868
Alignment:
Q  139 tattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| ||||    
T  26988915 tattctctttctctctgataccacgcgttccatcaccatcactgcatc 26988868  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 10543392 - 10543454
Alignment:
Q  70 cggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||| || ||||||||||| |||||||| ||| ||||||||||| ||||||| || ||||||    
T  10543392 cggactttagggtgtgcaaggagctcaatagaatcgggcctcctcaaggtatgagcttcaaaa 10543454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 34425735 - 34425781
Alignment:
Q  143 ctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||||||| |||||||||| |||||||| |||| |||||||||||    
T  34425735 ctctttctctttgataccacacgttccatcgccataactccatcaga 34425781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 11242714 - 11242649
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    |||||||||||| |||||||||| || ||||||||||  ||||||  | |||||||||||| ||||    
T  11242714 ggccggaccttgaggtgtgcaaggagttcaatggaacttggcctctccaaggtatgggcctaaaaa 11242649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 15639160 - 15639225
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||| |||||| |||||||||| ||||||||||||| ||  |||| | |||||||||||| ||||    
T  15639160 ggccgtaccttgaggtgtgcaaggagctcaatggaactggagctccccaaggtatgggcctaaaaa 15639225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 40794604 - 40794552
Alignment:
Q  135 ttcttattctctttctctctgataccacatgttccatcaccattactccatca 187  Q
    |||||||||||||||||| |||||||||  ||||||| ||||| | |||||||    
T  40794604 ttcttattctctttctctttgataccacgcgttccattaccatcattccatca 40794552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 21666098 - 21666036
Alignment:
Q  65 aaggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcct 127  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||    
T  21666098 aaggccggaccttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgggcct 21666036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 37182482 - 37182540
Alignment:
Q  129 aaaattttcttattctctttctctctgataccacatgttccatcaccattactccatca 187  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  37182482 aaaaatttcttattctctttctctctgataccacacgttacatcaccattactccatca 37182540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 11953009 - 11952944
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||||| | ||||||| |||||||||    
T  11953009 ggccgaaccttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgagcctcaaaa 11952944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 12134426 - 12134363
Alignment:
Q  68 gccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||    
T  12134426 gccggactttggggtgtgcaagaaggtcaatggaaccgggcctcttcaaggtat-ggcctcaaaa 12134363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 16227657 - 16227599
Alignment:
Q  128 caaaattttcttattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    ||||| |||||||||||||||||||||||||||||  ||| ||||||||| ||||||||    
T  16227657 caaaaatttcttattctctttctctctgataccacgcgtttcatcaccatcactccatc 16227599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 11913032 - 11912977
Alignment:
Q  130 aaattttcttattctctttctctctgataccacatgttccatcaccattactccat 185  Q
    |||||||||||||||||||||||||||||||||   |||||||| ||| |||||||    
T  11913032 aaattttcttattctctttctctctgataccacgcattccatcatcataactccat 11912977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 37622608 - 37622549
Alignment:
Q  130 aaattttcttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||||||||||| ||||||||||| |||||||  ||||||||| ||| |||||||||||    
T  37622608 aaattttcttattatctttctctctcataccacgcgttccatcatcatcactccatcaga 37622549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 38400620 - 38400670
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactccatca 187  Q
    |||||||||||||| |||||||||||||||||||||||  | |||||||||    
T  38400620 cttattctctttctttctgataccacatgttccatcactgtcactccatca 38400670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 21665980 - 21665928
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||||||||||||| |||||||||  ||||||||| ||| |||||||||||    
T  21665980 cttattctctttctctttgataccacgcgttccatcatcatcactccatcaga 21665928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 24035923 - 24035887
Alignment:
Q  76 ttggggtgtgcaagaagctcaatggaaccgggcctcc 112  Q
    |||||||||||||| ||||||||||||||||||||||    
T  24035923 ttggggtgtgcaaggagctcaatggaaccgggcctcc 24035887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 11952885 - 11952839
Alignment:
Q  138 ttattctctttctctctgataccacatgttccatcaccattactcca 184  Q
    |||||||||||||||||| ||||||  ||||||||||||| ||||||    
T  11952885 ttattctctttctctctggtaccacgcgttccatcaccatcactcca 11952839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 29694087 - 29694144
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatggg 124  Q
    ||||| ||||||||||||||||  ||||||||||| | |||||||||  |||||||||    
T  29694087 ggccgcaccttggggtgtgcaaagagctcaatggagctgggcctccttaaggtatggg 29694144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 21190987 - 21190927
Alignment:
Q  69 ccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctca 129  Q
    |||| |||||||| ||||||  ||||||||||| | |||||||| | ||||||||||||||    
T  21190987 ccggcccttggggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcctca 21190927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 30175524 - 30175584
Alignment:
Q  69 ccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctca 129  Q
    |||| |||||||| ||||||  ||||||||||| | |||||||| | ||||||||||||||    
T  30175524 ccggcccttggggggtgcaaacagctcaatggagctgggcctccccaaggtatgggcctca 30175584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 39135125 - 39135060
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||| ||||||||||||||||  ||||||||||||| |||||||| | |||||||||||||||||    
T  39135125 ggccgaaccttggggtgtgcaaagagctcaatggaactgggcctccccaaggtatgggcctcaaaa 39135060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 26803784 - 26803835
Alignment:
Q  138 ttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||||||||||||||| ||||| | |||||||||||||| |||||||||||    
T  26803784 ttattctctttctctctaataccgcgtgttccatcaccatcactccatcaga 26803835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 10926223 - 10926171
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||||||||||||||||| |||||   ||||||||||||| |||||||||||    
T  10926223 cttattctctttctctctggtaccatgcgttccatcaccatcactccatcaga 10926171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 39134995 - 39134950
Alignment:
Q  144 tctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||||||||||||||||   ||||||||||||| |||||||||||    
T  39134995 tctttctctctgataccatgcgttccatcaccatcactccatcaga 39134950  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 23641525 - 23641461
Alignment:
Q  68 gccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||||| |||||||||||||   ||||||||||||||||||||| | |||||||||||||||||    
T  23641525 gccggactttggggtgtgcaaaccgctcaatggaaccgggcctccccaaggtatgggcctcaaaa 23641461  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 26279366 - 26279413
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactcca 184  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  26279366 cttattctctttctctctgataccacacgttccatcaccatcactcca 26279413  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 52468115 - 52468166
Alignment:
Q  138 ttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||    
T  52468115 ttattctctttctctctgataccacgcgttccatcaccatcactccatcaga 52468166  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 15734807 - 15734867
Alignment:
Q  72 gaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||||||| |||||||| |||| ||||||||||| ||||| | |||||||||||||||||    
T  15734807 gaccttgggatgtgcaaggagctgaatggaaccggacctccccaaggtatgggcctcaaaa 15734867  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 40217047 - 40217110
Alignment:
Q  128 caaaattttcttattctctttctctctgataccaca--tgttccatcaccattactccatcaga 189  Q
    ||||| ||||||||||||||||||||| ||| ||||  |||||||||||||| |||||||||||    
T  40217047 caaaaatttcttattctctttctctctaatatcacatgtgttccatcaccatcactccatcaga 40217110  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 40216866 - 40216931
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    |||||||| |||||||||||||  || ||||||||| ||||||||||| || |||||| |||||||    
T  40216866 ggccggacattggggtgtgcaaagagatcaatggaatcgggcctcctcaagatatgggtctcaaaa 40216931  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 27111747 - 27111789
Alignment:
Q  70 cggaccttggggtgtgcaagaagctcaatggaaccgggcctcc 112  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||    
T  27111747 cggaccttgaggtgtgcaaggagctcaatgcaaccgggcctcc 27111789  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 24396757 - 24396810
Alignment:
Q  129 aaaattttcttattctctttctctctgataccacatgttccatcaccattactc 182  Q
    ||||||| ||||||||||||||||||||||| |   ||||||||||||| ||||    
T  24396757 aaaatttacttattctctttctctctgatactaagcgttccatcaccatcactc 24396810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 39329692 - 39329631
Alignment:
Q  128 caaaattttcttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||| || ||||||||||||||||||||||||||  |||| |||| ||| |||| ||||||    
T  39329692 caaaaattccttattctctttctctctgataccacgcgttctatcatcatcactcaatcaga 39329631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 36118735 - 36118687
Alignment:
Q  138 ttattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    |||||||||||||||||||||||||   |||||| ||||| ||||||||    
T  36118735 ttattctctttctctctgataccacgctttccattaccatcactccatc 36118687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 37747002 - 37746950
Alignment:
Q  134 tttcttattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    ||||||||| |||||||||||||||||||   | |||||||||| ||||||||    
T  37747002 tttcttattatctttctctctgataccacgcataccatcaccatcactccatc 37746950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 50677296 - 50677268
Alignment:
Q  133 ttttcttattctctttctctctgatacca 161  Q
    |||||||||||||||||||||||||||||    
T  50677296 ttttcttattctctttctctctgatacca 50677268  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 41677516 - 41677414
Alignment:
Q  75 cttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaattttcttattctctttctctctgataccacatgttccatcac 174  Q
    |||| |||||||||  || ||||||||||  || ||||   ||||| | ||||||||||||||||||| || || ||||||||| |||||||||||||||    
T  41677516 cttgaggtgtgcaaatagttcaatggaactaggtctccctaaggtacgagcctcaaaattttcttattatccttttctctgatagcacatgttccatcac 41677417  T
Q  175 cat 177  Q
    |||    
T  41677416 cat 41677414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 25562076 - 25562011
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||| | | |||||||||| ||||    
T  25562076 ggccggaccttggggtgtgcaaggagctcaatggaatcaggcctccccaaagtatgggcctaaaaa 25562011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 34048986 - 34048938
Alignment:
Q  138 ttattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||||||    
T  34048986 ttattctctttctctccgataccacgcgttccatcaccatcactccatc 34048938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 8645917 - 8645964
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctc 114  Q
    |||||||||||| |||||||||| ||||||||||||| | ||||||||    
T  8645917 ggccggaccttgtggtgtgcaaggagctcaatggaactgagcctcctc 8645964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 5721428 - 5721493
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    |||||| | |||||||||||||   |||||||||||| |||||||| | ||| |||||||||||||    
T  5721428 ggccgggctttggggtgtgcaaaccgctcaatggaactgggcctccccaaggcatgggcctcaaaa 5721493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 15078583 - 15078635
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||| | |||||||||||||||||  ||||||||||||| |||| ||||||    
T  15078583 cttattatttttctctctgataccacgcgttccatcaccatcactctatcaga 15078635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 15167693 - 15167641
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||| | |||||||||||||||||  ||||||||||||| |||| ||||||    
T  15167693 cttattatttttctctctgataccacgcgttccatcaccatcactctatcaga 15167641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 20153024 - 20153074
Alignment:
Q  135 ttcttattctctttctctctgataccacatgttccatcaccattactccat 185  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  20153024 ttcttgttctctttctctctgataccacacgttccatcaccatcactccat 20153074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 12419888 - 12419823
Alignment:
Q  67 ggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    |||||||||||||||| |||||| || ||||||||||||||||||  | |||||||||||| ||||    
T  12419888 ggccggaccttggggtctgcaaggagttcaatggaaccgggcctcaccaaggtatgggcctaaaaa 12419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 23020765 - 23020712
Alignment:
Q  133 ttttcttattctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| | ||||||    
T  23020765 ttttcttattctctttctctctgataccacgcgttccatcaccatcattccatc 23020712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 23858888 - 23858949
Alignment:
Q  128 caaaattttcttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||| || ||||||||||||||||||||||||||  ||||||||||||| ||| |||||||    
T  23858888 caaaaattccttattctctttctctctgataccacgcgttccatcaccatcactgcatcaga 23858949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 26917965 - 26917909
Alignment:
Q  133 ttttcttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||| |||||||||||    
T  26917965 ttttcttattctctttctatctgataccatgtgtttcatcaccatcactccatcaga 26917909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 7398157 - 7398219
Alignment:
Q  65 aaggccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcct 127  Q
    |||| |||||||||||||||||||  ||||||||||| | | |||||| | ||||||||||||    
T  7398157 aaggtcggaccttggggtgtgcaacgagctcaatggagctgagcctccccaaggtatgggcct 7398219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 27237698 - 27237653
Alignment:
Q  141 ttctctttctctctgataccacatgttccatcaccattactccatc 186  Q
    |||||| |||||||||||||||  ||||||||||||| ||||||||    
T  27237698 ttctctatctctctgataccacgcgttccatcaccatcactccatc 27237653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 18200997 - 18201053
Alignment:
Q  68 gccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatggg 124  Q
    |||| |||||||||| |||||   ||||||||||||||||||||| | |||||||||    
T  18200997 gccgaaccttggggtttgcaaaccgctcaatggaaccgggcctccccaaggtatggg 18201053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 231137 - 231087
Alignment:
Q  139 tattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||||||||||||||||||||  |||||||||| ||| |||||||||||    
T  231137 tattctctttctctctgataccatgtgttccatcaacatcactccatcaga 231087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 38798 - 38862
Alignment:
Q  68 gccggaccttggggtgtgcaagaagctcaatggaaccgggcctcctcgaggtatgggcctcaaaa 132  Q
    ||||||| |||||||||||||| || |||||||||| ||| || | | |||||||||||||||||    
T  38798 gccggactttggggtgtgcaaggagttcaatggaactgggtcttcccaaggtatgggcctcaaaa 38862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 2477976 - 2477934
Alignment:
Q  70 cggaccttggggtgtgcaagaagctcaatggaaccgggcctcc 112  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||    
T  2477976 cggaccttgaggtgtgcaaggagctcaatgcaaccgggcctcc 2477934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 20611611 - 20611668
Alignment:
Q  132 attttcttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    ||||| ||||||||||||||| ||||| ||   |||||||||||||| ||||||||||    
T  20611611 atttttttattctctttctctatgatatcaagcgttccatcaccattgctccatcaga 20611668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 1179 - 1231
Alignment:
Q  137 cttattctctttctctctgataccacatgttccatcaccattactccatcaga 189  Q
    |||||| | |||||||||||||||||  ||||||||||||| |||| ||||||    
T  1179 cttattatttttctctctgataccacgcgttccatcaccatcactctatcaga 1231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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