View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18511_low_15 (Length: 258)
Name: NF18511_low_15
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 9975483 - 9975708
Alignment:
| Q |
17 |
agaagttgtatgagatttgtgagtgtgcatctgaatctctgttgcctgtataattattttgtggaaacatggaatattagttaatggttggtttggtacg |
116 |
Q |
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| T |
9975483 |
agaagttgtatgagatttgtgagtgtgcatctgaatctctgttgcctgtataattattttgtggaaacatggaatattagttaatggttggtttggtacg |
9975582 |
T |
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| Q |
117 |
ttatcattgtnnnnnnnnnnnnnnngatacaaatcatatggaagtgttggaagtatttaatatataatacatgataaaacataagt-nnnnnnnntaata |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
9975583 |
ttatcattgt----aaaaacaattagatacaaatcatatggaagtgttggaagtatttaatatataatatatgataaaacataagtaaaaaaaaaaaata |
9975678 |
T |
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| Q |
216 |
tgaacatgataatagaggctacttatccat |
245 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
9975679 |
tgaacatgataatataggctacttatccat |
9975708 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 7113103 - 7113053
Alignment:
| Q |
17 |
agaagttgtatgagatttgtgagtgtgcatctgaatctctgttgcctgtat |
67 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||| ||||| |
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| T |
7113103 |
agaagttgtatggaatttgtgagtgtgcatctgaatctccgttgcttgtat |
7113053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 19855814 - 19855786
Alignment:
| Q |
32 |
tttgtgagtgtgcatctgaatctctgttg |
60 |
Q |
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| T |
19855814 |
tttgtgagtgtgcatctgaatctctgttg |
19855786 |
T |
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