View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18511_low_2 (Length: 504)
Name: NF18511_low_2
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 101 - 496
Target Start/End: Complemental strand, 39677347 - 39676959
Alignment:
| Q |
101 |
gtgttcagtcttttgtatcaagttattatcaagaagatttatagttcttctnnnnnnnnttcatccttttatctaacatcccacaacttcaacatggtat |
200 |
Q |
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| T |
39677347 |
gtgttcagtcttttgtatcaagttattatgaagaagatttatagttct---aaaaaatattcatccttttaactaacatcccacaacttcaacatggtat |
39677251 |
T |
|
| Q |
201 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgg-acaattttatagttgtatacttgtatttgggaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
39677250 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgggacaattttatagttgtatacttgtgtttgggaa |
39677151 |
T |
|
| Q |
300 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcatgacacacgacatgtgccattacatctagcaactcttgcaggtgcgtgaagacca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39677150 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcatgacacacgacatgt-----tacatctagcaactcttgcaggtgcgtgaagacca |
39677056 |
T |
|
| Q |
400 |
tgcgccgctatacaggctgtcgttgacgaaggcgacttcattgttgttctctccagctattcctctttcttgtttggtattggcttgttggcctttg |
496 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677055 |
tgcaccgctatacaggctgtctttgacgaaggcgacttcattgttgttctctccagctattcctctttcttgtttggtattggcttgttggcctttg |
39676959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 39678253 - 39678153
Alignment:
| Q |
1 |
tctcttaggattagttttactttacttacatattattttgatttgtttcttaatttccctatctaggactaagtagtgtatcccctaaatatatgagtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
39678253 |
tctcttaggattagttttactttacttacatattattttgatttgtttcttaatttccctatctaggactaagtagtgtatctcctaaatatacgagtta |
39678154 |
T |
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| Q |
101 |
g |
101 |
Q |
| |
|
| |
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|
| T |
39678153 |
g |
39678153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 26868609 - 26868509
Alignment:
| Q |
34 |
tattttgatttgtttcttaatttccctatctaggacta-agtagtgtat-cccctaaatatatgagttagtgttcagtcttttgtatcaagttattatca |
131 |
Q |
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|||||||||||||||||| || ||||||| |||| ||| ||| ||||| |||||| ||||| | ||||||||| ||||||| |||||||||| |||||| |
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| T |
26868609 |
tattttgatttgtttcttgatatccctatttagggctagagtcttgtatccccctatatataggggttagtgtttagtctttggtatcaagttgttatca |
26868510 |
T |
|
| Q |
132 |
a |
132 |
Q |
| |
|
| |
|
|
| T |
26868509 |
a |
26868509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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