View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18511_low_4 (Length: 476)

Name: NF18511_low_4
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18511_low_4
NF18511_low_4
[»] chr1 (3 HSPs)
chr1 (223-460)||(39365533-39365759)
chr1 (64-232)||(39201623-39201791)
chr1 (16-65)||(39201825-39201875)
[»] chr8 (4 HSPs)
chr8 (64-226)||(8745944-8746106)
chr8 (110-217)||(30202251-30202358)
chr8 (71-221)||(4679481-4679631)
chr8 (23-65)||(8746139-8746181)
[»] chr2 (1 HSPs)
chr2 (74-226)||(21195197-21195349)
[»] chr6 (2 HSPs)
chr6 (107-221)||(7464948-7465062)
chr6 (92-227)||(21453941-21454077)
[»] chr3 (2 HSPs)
chr3 (111-217)||(8706815-8706921)
chr3 (111-217)||(9058702-9058808)
[»] chr4 (1 HSPs)
chr4 (90-217)||(48707428-48707555)
[»] chr7 (1 HSPs)
chr7 (71-193)||(38481106-38481228)
[»] chr5 (1 HSPs)
chr5 (156-226)||(5741994-5742064)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 223 - 460
Target Start/End: Original strand, 39365533 - 39365759
Alignment:
Q  223 ttagggagaagacattgtgaagaacgtcaaaacagaaactagcatgcctgatttggtgaaggtacaactagtcacatgtttgcatggactacaataaact 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39365533 ttagggagaagacattgtgaagaacgtcaaaacagaaactagcatgcctgatttggtgaaggtacaactagtcacatgtttgcatggactacaataaact 39365632  T
Q  323 tcacttgaatcgacctttctgcaaaagttgtagcctgaagttgtaggaagaaatttctcaagaaagtggaggctttagnnnnnnnnctgtaaaatccctt 422  Q
    ||||| ||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  39365633 tcactagaatcgacctttctgcaa-------------aagttgtaggaagaaatttctcaagaaagtggaggctttagaaaaaaaactgtaaaatccctt 39365719  T
Q  423 ggttttaa--tttaataggacaaggaattaaagaaaattc 460  Q
    ||||||||  |||||||||||||||||| |||||||||||    
T  39365720 ggttttaatttttaataggacaaggaatcaaagaaaattc 39365759  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 39201791 - 39201623
Alignment:
Q  64 tctaactagcgtggaaacaatttcaggtgtgggccccatcaatattcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttcc 163  Q
    ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||| || || |||||    
T  39201791 tctaactagtgcggaaacaatttcaggtgtgggccccatcaatatccttctttcctatgtctttctatgatatttcaaactatggaaacctttcttttcc 39201692  T
Q  164 actttctttctctccactcacaatctttccttcctccatcaattgaaacaaacagaccattagggagaa 232  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  39201691 actttctttctctccactcacaatctttccttccttcatcagttgaaacaaacagaccattagggagaa 39201623  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 39201875 - 39201825
Alignment:
Q  16 gctgataaacattt-ataaaagtaataaaacaagggtgtttatgacttttc 65  Q
    |||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  39201875 gctgataaacattttataaaagtaataaaacaagggtatttatgacatttc 39201825  T

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Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 8746106 - 8745944
Alignment:
Q  64 tctaactagcgtggaaacaatttcaggtgtgggccccatcaatattcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttcc 163  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8746106 tctaactagcgtggaaacaatttcaagtgtgggccccatcaatattcttctttcctatgcctttccatggtattccaaactatggaaatctctcctttcc 8746007  T
Q  164 actttctttctctccactcacaatctttccttcctccatcaattgaaacaaacagaccattag 226  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8746006 actttctttctctccactcacaatctttccttcctccatcagttgaaacaaacagaccattag 8745944  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 30202358 - 30202251
Alignment:
Q  110 cttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttctttctctccactcacaatctttccttcctccatcaattga 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  30202358 cttctttcctatgtctttccatggtattccaaactatggaaacctcttctttccactttctttctctccactcacaatctttcctccctctatcaattga 30202259  T
Q  210 aacaaaca 217  Q
    ||||||||    
T  30202258 aacaaaca 30202251  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 4679631 - 4679481
Alignment:
Q  71 agcgtggaaacaatttcaggtgtgggccccatcaat-attcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttc 169  Q
    |||| ||||||||||| | || |||||||||||||  || ||||||||||||  ||||| ||||| |||||||||||||||| |||||||||||||||||    
T  4679631 agcgcggaaacaattt-atgtttgggccccatcaaagatgcttctttcctatacctttctatggtgttccaaactatggaaacctctcctttccactttc 4679533  T
Q  170 tttctctccactcacaatctttccttcctccatcaattgaaacaaacagacc 221  Q
    |||||||||||||| ||||||||||  ||| |||| ||||||||||||||||    
T  4679532 tttctctccactcagaatctttcctcactctatcagttgaaacaaacagacc 4679481  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 8746181 - 8746139
Alignment:
Q  23 aacatttataaaagtaataaaacaagggtgtttatgacttttc 65  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8746181 aacatttataaaagtaataaaacaagggtgtttatgacttttc 8746139  T

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Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 21195349 - 21195197
Alignment:
Q  74 gtggaaacaatttcaggtgtgggccccatcaat-attcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttcttt 172  Q
    ||||||||||||| || |||||||||||||||  |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  21195349 gtggaaacaattttag-tgtgggccccatcaaagattcttctttcctatgtctttccatggtgttccaaacaatggaaacctctcctttccactttcttt 21195251  T
Q  173 ctctccactcacaatctttccttcctccatcaattgaaacaaacagaccattag 226  Q
    ||||||| |||||||||||||| ||||||||| | |||||||||||||| ||||    
T  21195250 ctctccattcacaatctttcctccctccatcagtagaaacaaacagacccttag 21195197  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 7465062 - 7464948
Alignment:
Q  107 attcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttctttctctccactcacaatctttccttcctccatcaat 206  Q
    |||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||| ||||||||| |    
T  7465062 attcttctttcctatgcctttccatggtgttccaaactatggaaacctcttctttccactttctttctctccattcgcaatctttcctccctccatcagt 7464963  T
Q  207 tgaaacaaacagacc 221  Q
      |||||||||||||    
T  7464962 aaaaacaaacagacc 7464948  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 21453941 - 21454077
Alignment:
Q  92 gtgggccccatcaat-attcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttctttctctccactcacaatctt 190  Q
    ||||||||||||||  || |||||||||||||||||| |||||| |||||||||||||||| | || ||||||||||| |||||||||| ||||||||||    
T  21453941 gtgggccccatcaaagatgcttctttcctatgtcttttcatggtgttccaaactatggaaaccccttctttccactttatttctctccagtcacaatctt 21454040  T
Q  191 tccttcctccatcaattgaaacaaacagaccattagg 227  Q
    |||| | || ||||||||||| ||||| ||| |||||    
T  21454041 tcctccttctatcaattgaaaaaaacaaacccttagg 21454077  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 8706815 - 8706921
Alignment:
Q  111 ttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttctttctctccactcacaatctttccttcctccatcaattgaa 210  Q
    |||||||||||| |||||  |||| ||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||  ||| ||||||||||    
T  8706815 ttctttcctatgcctttctttggtgttccaaactatagaaacctcttctttccactttctttttctccactcacaatctttcctcactctatcaattgaa 8706914  T
Q  211 acaaaca 217  Q
    |||||||    
T  8706915 acaaaca 8706921  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 9058702 - 9058808
Alignment:
Q  111 ttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttctttctctccactcacaatctttccttcctccatcaattgaa 210  Q
    |||||||||||| |||||  |||| ||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||  ||| ||||||||||    
T  9058702 ttctttcctatgcctttctttggtgttccaaactatagaaacctcttctttccactttctttttctccactcacaatctttcctcactctatcaattgaa 9058801  T
Q  211 acaaaca 217  Q
    |||||||    
T  9058802 acaaaca 9058808  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 48707428 - 48707555
Alignment:
Q  90 gtgtgggccccatcaatattcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttctttctctccactcacaatct 189  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |  ||||||| || ||||||| ||||||||| |||| || | ||| ||||||||||    
T  48707428 gtgtgggccccatcaatattcttctttcctatgtctttttatgttgctccaaacaatagaaatctttcctttccagtttcattttgtcccctcacaatct 48707527  T
Q  190 ttccttcctccatcaattgaaacaaaca 217  Q
    |||||  ||| ||| ||| |||||||||    
T  48707528 ttcctctctctatctattaaaacaaaca 48707555  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 38481106 - 38481228
Alignment:
Q  71 agcgtggaaacaatttcaggtgtgggccccatcaatattcttctttcctatgtctttccatggtattccaaactatggaaatctctcctttccactttct 170  Q
    ||||||||||||||||   ||||||| ||||||||||| ||||||||| ||| ||||  ||| |  ||||||| ||||||| || ||||||||| | |||    
T  38481106 agcgtggaaacaattttgtgtgtggggcccatcaatatgcttctttcccatgcctttttatgttgctccaaacaatggaaacctttcctttccattgtct 38481205  T
Q  171 ttctctccactcacaatctttcc 193  Q
    |||||||| ||||||||||||||    
T  38481206 ttctctcctctcacaatctttcc 38481228  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 5741994 - 5742064
Alignment:
Q  156 tcctttccactttctttctctccactcacaatctttccttcctccatcaattgaaacaaacagaccattag 226  Q
    ||||||||||||||||||||||| ||||| ||| ||||  |||  |||| |||||||||| | ||||||||    
T  5741994 tcctttccactttctttctctcccctcacgatccttcccccctttatcagttgaaacaaatataccattag 5742064  T

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