View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18511_low_5 (Length: 473)
Name: NF18511_low_5
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_low_5 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 10492600 - 10492151
Alignment:
| Q |
18 |
aatagggcatagagtgctgaacttgcttcatctggaaaatattccaatgcttgcaattttctttctatttatacactttcattaatttttaagagacatc |
117 |
Q |
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| T |
10492600 |
aatagggcatagagtgctgaacttgcttcatctggaaaatattccaatgcttgcaattttctttctatttatacactttcattaatttttaagagacatc |
10492501 |
T |
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| Q |
118 |
accatgtgcatcaaactcttattttatgttcatgttgaaggcttatgaatatcatgtattgcattgcacgtgggaccttaacaatcatgttaaataccaa |
217 |
Q |
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| T |
10492500 |
accatgtgcatcaaactcttattttatgttcatgttgaaggcttatgaatatcatgtat-----tgcacgtgggaccttaacaatcatgttaaataccaa |
10492406 |
T |
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| Q |
218 |
tctcactctcactctatatcacatgcatcattgcattcagctagatttttattcaaaatcaccctctcnnnnnnnnctcttcctccattcaaacctcatt |
317 |
Q |
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| T |
10492405 |
tctcactctcactctatatcacttgcatcattgcattcagctagatttttattcaaaatcaccctctcttttttttctcttcctccattcaaacctcatt |
10492306 |
T |
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| Q |
318 |
aannnnnnnnnngtaacctcttttagcttaaagagtttcatcatgggtgagaaaaccatgttattaacatttttacttcttattattatgcaacaaaaca |
417 |
Q |
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| T |
10492305 |
aa-attttttttgtaacctcttttagcttaaagagtttcatcatgggtgagaaaaccatgttattaacatttttacttcttattattatgcaacaaaaca |
10492207 |
T |
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| Q |
418 |
ttggttcaattgaagcatcaaggttgctaaatattaatccaccaccaactattcct |
473 |
Q |
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| T |
10492206 |
ttggttcaattgaagcatcaaggttgctaaatattaatccaccaccaactattcct |
10492151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 442
Target Start/End: Original strand, 12907031 - 12907120
Alignment:
| Q |
356 |
catcatgggtgagaaaaccatgttattaacatttttactt---cttattattatgcaacaaaacattggttcaattgaagcatcaaggtt |
442 |
Q |
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| T |
12907031 |
catcatggctgagaaaatcatgtttgtaacctatttacttatccttattattatgcaacaataccttggatcaatggaagcatcaaggtt |
12907120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 443
Target Start/End: Complemental strand, 103923 - 103835
Alignment:
| Q |
358 |
tcatgggtgagaaaaccatgttattaacatttttacttct---tattattatgcaacaaaacattggttcaattgaagcatcaaggttg |
443 |
Q |
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| T |
103923 |
tcatggctgagaaaatcatgtttttaacctttttacttctccttattgttatgcaacaaaacattgattcaatggaagcatcaaggttg |
103835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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