View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18511_low_7 (Length: 447)
Name: NF18511_low_7
Description: NF18511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18511_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 2 - 431
Target Start/End: Complemental strand, 3810350 - 3809921
Alignment:
| Q |
2 |
ggatggaaaaaacataattgagagaagagactccaataaagggtttaagtaaatatacatatggaccaaaaaagaccaccttaatgattacttgcaccaa |
101 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810350 |
ggatggaaaaaacataatcaagagaagagactccaataaagggtttaagtaaatatacatatggaccaaaaaagaccaccttaatgattacttgcaccaa |
3810251 |
T |
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| Q |
102 |
taacatggttacaaagaaaaaacaaaacacttactgatttccgttacaataagattagagaaactcaaaaataatgaatacggccctttcaaacttaccc |
201 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810250 |
taacattgttccaaagaaaaaacaaaacacttactgatttccgttacaataagattagagaaactcaaaaataatgaatacggccctttcaaacttaccc |
3810151 |
T |
|
| Q |
202 |
tatagtttggcgacgttgttcatgccactggatgcctagtggcaggacaggccaagaccaccaataccatggcttcaaccatggtgcccccgggaatgtg |
301 |
Q |
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| T |
3810150 |
tatagtttggcgacgttgttcatgccactggatgcctagtggcaggacaggccaagaccaccaataccatggcttcaaccatggtgcccccgggaatgtg |
3810051 |
T |
|
| Q |
302 |
atcacactatttggtccacatggtatgctccaacgaagtttaagatctgaaatcaagaaggggagatattagcacaaattacttagattccaatgagcga |
401 |
Q |
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| T |
3810050 |
atcacactatttggtccacatggtatgctccaacgaagtttaagatctgaaatcaagaaggggagatattagcacaaattacttagattccaatgagcga |
3809951 |
T |
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| Q |
402 |
ctgcattagtgcatattacaatgtttaaag |
431 |
Q |
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| T |
3809950 |
ctgcattagtgcatattaaaatgtttaaag |
3809921 |
T |
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Back To:
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Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 193 - 350
Target Start/End: Original strand, 41673537 - 41673694
Alignment:
| Q |
193 |
aacttaccctatagtttggcgacgttgttcatgccactggatgcctagtggcaggacaggccaagaccaccaataccatggcttcaaccatggtgccccc |
292 |
Q |
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||||||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
41673537 |
aacttaccctaaagtttgaagacgcttttcatgccactggaggcctaatggcaggacaggccacgcccaccaataccatggcttcaaccatggtgccccc |
41673636 |
T |
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| Q |
293 |
gggaatgtgatcacactatttggtccacatggtatgctccaacgaagtttaagatctg |
350 |
Q |
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||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
41673637 |
gggaacgtaatcacactatttggtccgcatggtatgctccagcgaagtttaagatctg |
41673694 |
T |
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