View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18512_high_12 (Length: 341)

Name: NF18512_high_12
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18512_high_12
NF18512_high_12
[»] chr4 (7 HSPs)
chr4 (19-285)||(26827651-26827917)
chr4 (21-284)||(23875096-23875363)
chr4 (21-284)||(24297891-24298154)
chr4 (21-282)||(23423590-23423855)
chr4 (21-217)||(23448090-23448286)
chr4 (21-98)||(23446736-23446813)
chr4 (236-284)||(23448287-23448332)
[»] chr8 (1 HSPs)
chr8 (19-244)||(35961474-35961699)
[»] chr2 (3 HSPs)
chr2 (27-243)||(41257504-41257714)
chr2 (27-243)||(41244591-41244804)
chr2 (27-76)||(34614970-34615019)
[»] chr1 (1 HSPs)
chr1 (21-87)||(12165045-12165113)
[»] chr7 (2 HSPs)
chr7 (27-111)||(46584344-46584428)
chr7 (26-88)||(44071961-44072023)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 26827917 - 26827651
Alignment:
Q  19 attcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26827917 attcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacg 26827818  T
Q  119 gccgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttcttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26827817 gccgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttcttt 26827718  T
Q  219 gttgtcttggtgcttgcgtccattttgaactgagattttgagaggaaaagaatatttgaatgcgaac 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26827717 gttgtcttggtgcttgcgtccattttgaactgagattttgagaggaaaagaatatttgaatgcgaac 26827651  T

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Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 23875363 - 23875096
Alignment:
Q  21 tcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggc 120  Q
    |||||||||||||||||||| |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||||| ||| |  |    
T  23875363 tcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctac 23875264  T
Q  121 cgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctttgt 220  Q
    |||||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  23875263 cgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggacctcctcctttccttccaccggctcccttctttgt 23875164  T
Q  221 tgtcttggtgcttgcgtccattttgaactgag----attttgagaggaaaagaatatttgaatgcgaa 284  Q
    ||||||||||||||| |||||||  |||||||    |||||||||| ||||||| |||||||||||||    
T  23875163 tgtcttggtgcttgcctccatttcaaactgagaaaaattttgagagaaaaagaaaatttgaatgcgaa 23875096  T

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Target: chr4; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 24298154 - 24297891
Alignment:
Q  21 tcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggc 120  Q
    |||||||| |||||||| || |||||||||||||| |||||||| ||||||||||| || |||||||||||||| ||||  |||||||||| ||| |  |    
T  24298154 tcaagaacttcagcagcaagatattcaagaactgctgctaggtataccggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctac 24298055  T
Q  121 cgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctttgt 220  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||    
T  24298054 cgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggtcctcctcctttccttccaccggctcccttcttcgt 24297955  T
Q  221 tgtcttggtgcttgcgtccattttgaactgagattttgagaggaaaagaatatttgaatgcgaa 284  Q
    || ||| | |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  24297954 tgcctttgggcttgcgtccatttcgaactgagattttgagagaaaaagaaaatttgaatgcgaa 24297891  T

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Target: chr4; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 23423590 - 23423855
Alignment:
Q  21 tcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggc 120  Q
    |||||||||||||||||||| |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||||| ||| |  |    
T  23423590 tcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctac 23423689  T
Q  121 cgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctttgt 220  Q
    |||||||||| || || ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||    
T  23423690 cgattcttccaaccggaaattgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctcctcccttccttcctcctgctcccttctttgt 23423789  T
Q  221 tgtcttggtgcttgcgtccattttgaactgag----attttgagaggaaaagaatatttgaatgcg 282  Q
    ||||||||||||||| |||||||  |||||||    |||||||||| ||||||| |||||||||||    
T  23423790 tgtcttggtgcttgcctccatttcaaactgagaaaaattttgagagaaaaagaaaatttgaatgcg 23423855  T

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Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 23448090 - 23448286
Alignment:
Q  21 tcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggc 120  Q
    |||||||||||||||||||| |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||  |||||||||| ||| |  |    
T  23448090 tcaagaacctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctac 23448189  T
Q  121 cgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctt 217  Q
    |||||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  23448190 cgattcttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggttctcctcccttccttccaccggctcctttctt 23448286  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 23446736 - 23446813
Alignment:
Q  21 tcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatat 98  Q
    |||||||| |||||||| || |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||    
T  23446736 tcaagaacttcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagcatat 23446813  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 23448287 - 23448332
Alignment:
Q  236 gtccattttgaactgagattttgagaggaaaagaatatttgaatgcgaa 284  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||    
T  23448287 gtccattttgaactgagattttgagag--aaagaa-atttgaatgcgaa 23448332  T

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Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 35961699 - 35961474
Alignment:
Q  19 attcaagaacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacg 118  Q
    |||||||||| |||||||| || ||||||||||| || |||| |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  35961699 attcaagaacttcagcagcaagatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgttgagcatatcgacctttcttcaagtaacg 35961600  T
Q  119 gccgattcttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttcttt 218  Q
    |||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||| || || ||||| || |||||||||||     
T  35961599 gccgattcttcccactgggaattgaagtccggctctgattgatcttgttaccgacttcttccttggtcctccgccttttcttcctcctgctcctttcttc 35961500  T
Q  219 gttgtcttggtgcttgcgtccatttt 244  Q
    |||| ||| |||||||||||||||||    
T  35961499 gttgcctttgtgcttgcgtccatttt 35961474  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 41257714 - 41257504
Alignment:
Q  27 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattc 126  Q
    ||||||||||| || ||||||||||| ||||||| |||||| |||||||| || || ||||||||||| ||||  |||||||||| |||||| |||||||    
T  41257714 acctcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaacgaccgattc 41257615  T
Q  127 ttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctttgttgtctt 226  Q
    |||||||||| ||||| || || |||||| ||||||||||||| ||||||||||||||||| |||   ||||||||||| ||||| ||||   | |||||    
T  41257614 ttccgactggaaattgaagaccagctctggtggatcttgtcactgacttcttccttggaccacct---ttccttccaccagctcccttct---tcgtctt 41257521  T
Q  227 ggtgcttgcgtccattt 243  Q
    |||||||||||||||||    
T  41257520 ggtgcttgcgtccattt 41257504  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 41244591 - 41244804
Alignment:
Q  27 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattc 126  Q
    ||||||||||| || ||||||||||| || || |||||||| |||||||| || || ||||||||||| ||||  |||||||||| ||| || |||||||    
T  41244591 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattc 41244690  T
Q  127 ttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctttgttgtctt 226  Q
    |||| ||||| ||||| || || |||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||   | |||||    
T  41244691 ttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttct---tcgtctt 41244787  T
Q  227 ggtgcttgcgtccattt 243  Q
    |||||||||||||||||    
T  41244788 ggtgcttgcgtccattt 41244804  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 34615019 - 34614970
Alignment:
Q  27 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcacc 76  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  34615019 acctcagcagcgagatattcaagaacagcagctaggtaaacaggagcacc 34614970  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 12165113 - 12165045
Alignment:
Q  21 tcaagaacctcagcagcgaggtattca--agaactgcagctaggtaaaccggagcaccggtgccgacac 87  Q
    |||||||||||||||||||| ||||||  |||||||| |||||||| || ||||||||||| |||||||    
T  12165113 tcaagaacctcagcagcgagatattcaagagaactgctgctaggtatactggagcaccggttccgacac 12165045  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 46584428 - 46584344
Alignment:
Q  27 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttca 111  Q
    ||||| || ||||| ||||| ||||| || || ||||| | ||||||||||||||| |||||||||| ||| |||||||||||||    
T  46584428 acctcggcggcgagatattcgagaacggcggcgaggtagatcggagcaccggtgccaacacgctgagaatagcgacctttcttca 46584344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 44071961 - 44072023
Alignment:
Q  26 aacctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacg 88  Q
    ||||||||||||||| || ||||| || ||||  ||||| ||||||||||||| |||||||||    
T  44071961 aacctcagcagcgagatactcaagtacggcagagaggtagaccggagcaccggcgccgacacg 44072023  T

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