View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_high_16 (Length: 301)
Name: NF18512_high_16
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 919105 - 919358
Alignment:
| Q |
31 |
acgaaaatactcctaattatttaaaatctttttactatgcaatccaaaataatttgatgagtatataatttataggaaacaaaaaatatatgatgagaat |
130 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
919105 |
acgaaactactcctaattatttaaaatctttttattatgcaatccaaaataatttgatgagtatataatttataggaaaccaaaaatatatgatgagaag |
919204 |
T |
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| Q |
131 |
ataaactaataaaatttaaaggtaccaccaccctcaattcgattataatcttctgttattgtttgatgaaacataattgttatttatttgttagattatt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
919205 |
ataaactaataaaatttaaaggtaccaccaccctcaattcgattataatcatatgttattgtttgatgaaacataactgttacttatttgttagattatt |
919304 |
T |
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| Q |
231 |
aaaaagggacgttggtttatttggctctcaactttatgggtgttgtggaaggtt |
284 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
919305 |
aaaaagggacgttggcttatttggctctcaactttatgggtgttgtggaaggtt |
919358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 29973600 - 29973661
Alignment:
| Q |
223 |
agattattaaaaagggacgttggtttatttggctctcaactttatgggtgttgtggaaggtt |
284 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29973600 |
agattattaaaaagggtcgttggcttatttggctctcaactttatgggtgttgtggaaggtt |
29973661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 21648787 - 21648735
Alignment:
| Q |
228 |
attaaaaagggacgttggtttatttggctctcaactttatgggtgttgtggaa |
280 |
Q |
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||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
21648787 |
attaaaaagggccgttggcttatttggctctcaacgttatgggtgttgtggaa |
21648735 |
T |
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