View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_high_21 (Length: 240)
Name: NF18512_high_21
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 34344907 - 34344700
Alignment:
| Q |
15 |
aagaagaaaggagaggatgctgtggagatgattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatg |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344907 |
aagaagaaaggagaggatgctgtggagagaattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatg |
34344808 |
T |
|
| Q |
115 |
ctgattctattcaaacctttgcatcctccttcaaagacaaatttggagccaccttggatattctcgtatgtattaattacctattacttgttcaatttta |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34344807 |
ctgattctattaaaacctttgcatcctccttcaaagacaaatttggagccaccttggatattctcgtatgtattaattacctattatttgttcaatttta |
34344708 |
T |
|
| Q |
215 |
atttttac |
222 |
Q |
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|||||||| |
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| T |
34344707 |
atttttac |
34344700 |
T |
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