View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_high_23 (Length: 239)
Name: NF18512_high_23
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2321162 - 2320942
Alignment:
| Q |
1 |
ctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321162 |
ctccttctctccattgtcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
2321063 |
T |
|
| Q |
101 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321062 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaact |
2320963 |
T |
|
| Q |
201 |
ccaactttaaaagagtatctg |
221 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
2320962 |
ccaactctaaaagagtatctg |
2320942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2303461 - 2303241
Alignment:
| Q |
1 |
ctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
2303461 |
ctccttctctccattctcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtacttaaccaaattcgccataatccat |
2303362 |
T |
|
| Q |
101 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaact |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2303361 |
tgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaact |
2303262 |
T |
|
| Q |
201 |
ccaactttaaaagagtatctg |
221 |
Q |
| |
|
|||||| || ||||||||||| |
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|
| T |
2303261 |
ccaactctagaagagtatctg |
2303241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2293848 - 2293628
Alignment:
| Q |
1 |
ctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |
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|
| T |
2293848 |
ctccttctctccattttcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcactacattcgccataatccac |
2293749 |
T |
|
| Q |
101 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaact |
200 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||| |
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|
| T |
2293748 |
tgcaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggccact |
2293649 |
T |
|
| Q |
201 |
ccaactttaaaagagtatctg |
221 |
Q |
| |
|
| |||| ||| |||||||||| |
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|
| T |
2293648 |
ctaactctaagagagtatctg |
2293628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2310179 - 2309959
Alignment:
| Q |
1 |
ctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
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|
| T |
2310179 |
ctccttctctccattttcatcaccacccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttcaccacattcgccataatccac |
2310080 |
T |
|
| Q |
101 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaact |
200 |
Q |
| |
|
| |||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||| |
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|
| T |
2310079 |
tccaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctact |
2309980 |
T |
|
| Q |
201 |
ccaactttaaaagagtatctg |
221 |
Q |
| |
|
| |||| |||||||||||||| |
|
|
| T |
2309979 |
ctaactctaaaagagtatctg |
2309959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2330731 - 2330512
Alignment:
| Q |
1 |
ctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
100 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||| |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
2330731 |
ctccttctctccagcatcatcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcaccaaattcgccataatccat |
2330632 |
T |
|
| Q |
101 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaact |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||| || |||||||||| ||||||| |
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|
| T |
2330631 |
tgcaaagcggtggaagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcctgaggcaact |
2330532 |
T |
|
| Q |
201 |
ccaactttaaaagagtatct |
220 |
Q |
| |
|
|||||| | |||||||||| |
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|
| T |
2330531 |
ccaactccataagagtatct |
2330512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 2351035 - 2350819
Alignment:
| Q |
3 |
ccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactg |
102 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| | |||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| || |
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|
| T |
2351035 |
ccttctctccatttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattg |
2350936 |
T |
|
| Q |
103 |
caaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactcc |
202 |
Q |
| |
|
|||||| |||||||||||||| ||||| | ||||||||||| ||||||||| |||||||||||| |||||||| || |||||||| || ||||||||| |
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|
| T |
2350935 |
caaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactcc |
2350836 |
T |
|
| Q |
203 |
aactttaaaagagtatc |
219 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
2350835 |
aactccaaaagagtatc |
2350819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 2326999 - 2326798
Alignment:
| Q |
18 |
catcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagt |
117 |
Q |
| |
|
|||||| |||||| | ||| | |||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
2326999 |
catcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaccaaattcgccataatccaatgcaaagcggtggaagt |
2326900 |
T |
|
| Q |
118 |
agtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactttaaaagagta |
217 |
Q |
| |
|
|||||| || ||| | ||||||||||||||||||||| |||||||||||| |||| ||||||| ||||| ||| ||||||||||||| ||||| ||| |
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|
| T |
2326899 |
agtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttccgtttttccattggcaactccaactccaaaagtgta |
2326800 |
T |
|
| Q |
218 |
tc |
219 |
Q |
| |
|
|| |
|
|
| T |
2326799 |
tc |
2326798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 41126967 - 41126820
Alignment:
| Q |
74 |
tacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcac |
173 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | || ||||| || || || || ||| | ||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
41126967 |
tacttcaccaaattagccatgatccactggagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac |
41126868 |
T |
|
| Q |
174 |
tcaactttcgtttctcctcgggcaactccaactttaaaagagtatctg |
221 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
41126867 |
tcagcttgcgtttctcctcgggcaactccaattccaaaagagtatctg |
41126820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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