View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_10 (Length: 412)
Name: NF18512_low_10
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 23752503 - 23752119
Alignment:
| Q |
20 |
gtgcccacccatcttgcagctttgcttcattcacttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgttacccttttgagcacatgtt |
119 |
Q |
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||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23752503 |
gtgcccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtt |
23752404 |
T |
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| Q |
120 |
tcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23752403 |
tcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcatt |
23752304 |
T |
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| Q |
220 |
aagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttgtcaaaattgaccttaggaatcca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23752303 |
aagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttgttaaaattgaccttaggaatcca |
23752204 |
T |
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| Q |
320 |
tgctacccacaaaaaggagaagattatcaatcaaactgttccttctcagaaaataagcttgaagctccagaaatccattcatctc |
404 |
Q |
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| T |
23752203 |
tgctacccacaaagaagaaaaaaatatcaatcaaactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctc |
23752119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 25 - 404
Target Start/End: Complemental strand, 22619896 - 22619512
Alignment:
| Q |
25 |
cacccatcttgcagctttgcttcattcacttc-----cctcaaatatgcatagaaaccaaagttatgcttttgttgttgttacccttttgagcacatgtt |
119 |
Q |
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| T |
22619896 |
cacccatcttgcagctttgcttcattcacttcacttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtt |
22619797 |
T |
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| Q |
120 |
tcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||| |
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| T |
22619796 |
tcatgttactatgttctagtagccattcatcatttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcatt |
22619697 |
T |
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| Q |
220 |
aagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttgtcaaaattgaccttaggaatcca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
22619696 |
aagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttataaaaattgaccttaggaatcca |
22619597 |
T |
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| Q |
320 |
tgctacccacaaaaaggagaagattatcaatcaaactgttccttctcagaaaataagcttgaagctccagaaatccattcatctc |
404 |
Q |
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| T |
22619596 |
tgctacccacaaagaagaaaaaaatatcaatcaaactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctc |
22619512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 23853204 - 23852838
Alignment:
| Q |
20 |
gtgcccacccatcttgcagctttgcttcattcacttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgttacccttttgagcacatgtt |
119 |
Q |
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|||||||||| ||||||||| ||||||| || ||||||| ||||||| ||||||||||||||| ||||||| |||||| | |||||||| |||| || |
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| T |
23853204 |
gtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatt |
23853105 |
T |
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| Q |
120 |
tcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcatt |
219 |
Q |
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|||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||| |
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| T |
23853104 |
tcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatt |
23853005 |
T |
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| Q |
220 |
aagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttgtcaaaattgaccttaggaatcca |
319 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
23853004 |
tagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatcca |
23852905 |
T |
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| Q |
320 |
tgctacccacaaaaaggagaagattatcaatcaaactgttccttctcagaaaataagcttgaagctc |
386 |
Q |
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|| |||||||||||||||||| | | | | ||||||||| ||| |||| || |||||||||||||| |
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| T |
23852904 |
tgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaagctc |
23852838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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