View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_11 (Length: 399)
Name: NF18512_low_11
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 9643818 - 9643445
Alignment:
| Q |
16 |
cttttaaggactaaacatatttatattttaatatttcattgtaaaagcatcattaatggaaattggagtatcattacctcagttctatacatcttaatct |
115 |
Q |
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| T |
9643818 |
cttttaaggactaaacatatttatattttaatatttcattgtaaaagcatcattaatggaaattggagtatcattacctcagttctatacatcttaatct |
9643719 |
T |
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| Q |
116 |
cgtcttcaagaggcgtgatgacactttcaaatggataaaaatcttcttccttttgatctgtgtgtaatcttctaagtgctgattctgcagcatattgtgc |
215 |
Q |
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| T |
9643718 |
cgtcttcaagaggcgtgatgacactttcaaatggataaaaatcttcttccttttgatctgtgtgtaatcttctaagtgctgattctgcagcatattgtgc |
9643619 |
T |
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| Q |
216 |
agccaacgcatctttcttttcgtccgtcagtttcttgatttctaggttctgcatatgaagatattttgaataacatgcatcatagaatttatcattgttt |
315 |
Q |
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| T |
9643618 |
agccaacgcatctttcttttcgtccgtcagtttcttgatttctaggttctgcatatgaagatattttgaataacatgcatcatagaatttatcattgttt |
9643519 |
T |
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| Q |
316 |
tggatacaatagtaccttgtttttaagatgatcctctttaagtcttagtctctcatccatcttactgacttcat |
389 |
Q |
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| T |
9643518 |
tggatacaatagtaccttgtttttaagatgatcctctttaagtcttagtctctcatccatcttactgacttcat |
9643445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 56006479 - 56006393
Alignment:
| Q |
184 |
cttctaagtgctgattctgcagcatattgtgcagccaacgcatctttcttttcgtccgtcagtttcttgatttctaggttctgcata |
270 |
Q |
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| T |
56006479 |
cttctaagtgttgcttctgcggcatattgtgcagccattgcacttttctttttgtctgtcagtttcttgattcctatattctgcata |
56006393 |
T |
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