View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_13 (Length: 352)
Name: NF18512_low_13
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 45514905 - 45515224
Alignment:
| Q |
18 |
acctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatcatcatcagttcatatgca |
117 |
Q |
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| T |
45514905 |
acctctctagaaacaaattgcaaggttcaatacctcgatgcataggaaaccttgaaggaatgacattgggaaaatcaacatcatcatcagttcatatgca |
45515004 |
T |
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| Q |
118 |
gtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctcctagtactccggttgattggcctagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515005 |
gtcatacaatttaatagcagatgctcctcagacatggtcaaatgagtttcttacagatgtcaatgcattacctcctagtactccggttgattggcctagt |
45515104 |
T |
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| Q |
218 |
caatttgtcacggaagtagtgaaaggaacagaacttgagtataccaaaatattggagcttgtggtcaacatggacttgtcacaaaacaatttggttggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515105 |
caatttgtcacggaagtagtgaaaggaacagaacttgagtataccaaaatattggagcttgtggtcaacatggacttgtcacaaaacaatttggttggat |
45515204 |
T |
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| Q |
318 |
tcattccaaatgaaatcaca |
337 |
Q |
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|||||||||||||||||||| |
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| T |
45515205 |
tcattccaaatgaaatcaca |
45515224 |
T |
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