View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_15 (Length: 348)
Name: NF18512_low_15
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_15 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 40130627 - 40130280
Alignment:
| Q |
1 |
gtatacaatcagggaccttagtcgtaacatcatcactggttctatacctcaacaatgggctaaaatgaacttggttgatttgtaagaactttctgctatg |
100 |
Q |
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| T |
40130627 |
gtatacaatcagggaccttagtcgtaacatcatcactggttctatccctcaacaatgggctaaaatgaacttggttgatttgtaagaactttctgctatg |
40130528 |
T |
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| Q |
101 |
cacattttgatcattgcctcttaaatttcttctttttcaagtaagcaaactgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatg |
200 |
Q |
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| T |
40130527 |
cacattttggtcattgcctcttaaatttcttctttttcaagtaagcaaattgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatg |
40130428 |
T |
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| Q |
201 |
ggaaacagattgtcagggccattccctacagttctcaccaatattacaaccctcaaaaacttgtatgttatattatttctttatcttcaaacatgagtaa |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40130427 |
ggaaacagattttcagggccattccctacagttctcaccaatattacaaccctcaaaaacttgtatgttatattatttctttattttcaaacatgagtaa |
40130328 |
T |
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| Q |
301 |
atcctcactttggtcctcgagattataaacatcgaacataaagataaa |
348 |
Q |
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| T |
40130327 |
atcctcactttggtcctcgagtttataaacgtcgaacataaagataaa |
40130280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 39490034 - 39490124
Alignment:
| Q |
115 |
tgcctcttaaatttcttctttttcaagtaagcaaactgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatgggaaacagat |
210 |
Q |
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| T |
39490034 |
tgcctcttaagtttcttctttttcaactaa----actaaaa-tgacactaaagtttgttgtgtattcaatatgcacatttttaatgggaaatagat |
39490124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 39501224 - 39501314
Alignment:
| Q |
115 |
tgcctcttaaatttcttctttttcaagtaagcaaactgaaagtgacactaaagtttgttgtgtattgaatatgcagatctttcatgggaaacagat |
210 |
Q |
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|||||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||| |||||||| || ||| |||||||| |||| |
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| T |
39501224 |
tgcctcttaagtttcttctttttcaactaa----actaaaa-tgacactaaagtttgttgtgtattcaatatgcacatttttaatgggaaatagat |
39501314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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