View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_17 (Length: 339)
Name: NF18512_low_17
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_17 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 14397843 - 14397505
Alignment:
| Q |
1 |
tgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtacctgctgaagtctaaccagcacataaaaggagacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14397843 |
tgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtacctgctgaagtctaaccagcacataaaaggagacc |
14397744 |
T |
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| Q |
101 |
tttccataaaacagaaaacnnnnnnnntatgacaattacatttcatctccttcaacacaggcatcagccattccttcagcctcaccttcaccttgagcct |
200 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14397743 |
tttccataaaacaaaaaacaaaaaaaatatgacaattacatttcatctccttcaacaccggcatcagccattccttcagcctcaccttcaccttgagcct |
14397644 |
T |
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| Q |
201 |
tattatcatattctccatcgtcgccctcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcatt |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14397643 |
tattatcatattctccatcgtcgcgctcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcatt |
14397544 |
T |
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| Q |
301 |
gtcctccgatgacctatgaggactttcttccccttcatc |
339 |
Q |
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| T |
14397543 |
gtcctccgatgacctatgaggactttcttccccttcatc |
14397505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14391591 - 14391482
Alignment:
| Q |
1 |
tgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtacctgctgaagtctaaccagcacataaaaggagacc |
100 |
Q |
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| T |
14391591 |
tgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtacctgctgaagtctaatcagcacataaaaggagacc |
14391492 |
T |
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| Q |
101 |
tttccataaa |
110 |
Q |
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|||| ||||| |
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| T |
14391491 |
tttctataaa |
14391482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 161 - 339
Target Start/End: Original strand, 16024509 - 16024687
Alignment:
| Q |
161 |
gcatcagccattccttcagcctcaccttcaccttgagccttattatcatattctccatcgtcgccctcttctcgagaacactcctcaccattagtagatt |
260 |
Q |
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|||||||||||||||||||| |||||||||| || |||||||| ||||| ||||||||| || ||||||| |||| |||||||| |||| || ||||| |
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| T |
16024509 |
gcatcagccattccttcagcttcaccttcactttcagccttatcatcatgttctccatcatcatgctcttcttgagagcactcctctccatcagcagatt |
16024608 |
T |
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| Q |
261 |
cacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatc |
339 |
Q |
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| T |
16024609 |
cacttccagaaacatcaacgtttccagaagcgttttcactgccctctgatgacctctgaggactttcttccccttcatc |
16024687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 133 - 333
Target Start/End: Complemental strand, 14391418 - 14391225
Alignment:
| Q |
133 |
caattacatttcatctccttcaacacaggcatcagccattccttcagcctcaccttcaccttgagccttattatcatattctccatcgtcgccctcttct |
232 |
Q |
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|||| ||||| ||||| |||||||| ||||||||| ||||||||| | ||||||||| ||||||||||||| |||||||||| || ||||||| |
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| T |
14391418 |
caatgacattccatcttcttcaacatgggcatcagctattccttcaacttcaccttca------gccttattatcatgttctccatcg-cgtgctcttct |
14391326 |
T |
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| Q |
233 |
cgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccc |
332 |
Q |
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|||||||||| |||||||| | ||||||| |||| |||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||| |
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| T |
14391325 |
cgagaacactactcaccatcattagattcgattccagaaacataaacatttttagaacctttttcattgtcctcggatgacctatgaggactttctaccc |
14391226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 13883931 - 13884011
Alignment:
| Q |
256 |
agattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttc |
336 |
Q |
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|||||| ||||| |||||| |||||||||||||| |||||| | | |||||||||||||| |||||||| ||||||||||| |
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| T |
13883931 |
agattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctcttccccttc |
13884011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 309
Target Start/End: Complemental strand, 14393212 - 14393037
Alignment:
| Q |
133 |
caattacatttcatctccttcaacacaggcatcagccattccttcagcctcaccttcaccttgagccttattatcatattctccatcgtcgccctcttct |
232 |
Q |
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|||| ||||| |||||||||||||| ||||| |||||| | || ||| |||||||||| || ||||||| ||||| ||||||||| || |||| |
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| T |
14393212 |
caatgacattccatctccttcaacaggggcattagccat-catttagcttcaccttcactttcagccttactatcacgttctccatccctatgcttttct |
14393114 |
T |
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| Q |
233 |
cgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccga |
309 |
Q |
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| T |
14393113 |
cgagaacactcctcaccatctgtatattcgcttccaaaaacatcaacattttcaaaagcatttttactgtcctccga |
14393037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 13882112 - 13882205
Alignment:
| Q |
246 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatc |
339 |
Q |
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| T |
13882112 |
caccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtcctccaatgacctctgaggactttcttccccttcatc |
13882205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 16024335 - 16024387
Alignment:
| Q |
59 |
ttttgtacctgctgaagtctaaccagcacataaaaggagacctttccataaaa |
111 |
Q |
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| T |
16024335 |
ttttgtacctgatgaagtctaatcagcacatagaaggagtcatttccataaaa |
16024387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 325
Target Start/End: Original strand, 26202120 - 26202218
Alignment:
| Q |
227 |
tcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactt |
325 |
Q |
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|||||||||||||| |||||||||| || ||| ||| | || |||||| || |||| ||||| |||||||| |||| || ||||| |||||||||||| |
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| T |
26202120 |
tcttctcgagaacattcctcaccatcagcagactcagtaccagaaacatcaccattctcagatgcattttcactgtcgtctgatgatctatgaggactt |
26202218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 325
Target Start/End: Original strand, 29625322 - 29625420
Alignment:
| Q |
227 |
tcttctcgagaacactcctcaccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactt |
325 |
Q |
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|||||||||||||| |||||||||| || ||| || | || |||||| || |||| ||||| |||||||| |||| || ||||| |||||||||||| |
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| T |
29625322 |
tcttctcgagaacattcctcaccatcagcagactcggtaccagaaacatcaccattctcagatgcattttcactgtcgtctgatgatctatgaggactt |
29625420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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