View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18512_low_18 (Length: 336)
Name: NF18512_low_18
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 401563 - 401242
Alignment:
| Q |
1 |
cagctgctcacaatctgattgaagtccaagcttcggacaatgatccgtcttcttcaatttttgagatgcatggttatgtgtctaatgctaactatgctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401563 |
cagctgctcacaatctgattgaagtccaagcttcggacaatgatccgtcttcttcaatttttgagatgcatggttatgtgtctaatgctaactatgctgc |
401464 |
T |
|
| Q |
101 |
caagaaaatcactatggtgcttttcatcaatggtatacattatacattacattagctatataaacataaactatgatgcattttgaaatgtttagatgtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
401463 |
caagaaaatcactatggtgcttttcatcaatggtatacattatacattatattagctatataaacataaactatgatgcattttgaaatgtttagaggtg |
401364 |
T |
|
| Q |
201 |
tttatagttactatatgaagtctttgccagtgttagtttattccgtcagataatatgttttgccacatagaaactcttaccgtgaatgtactatgcataa |
300 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401363 |
tttatagttattatatgaagtctctggcagtgttagtttattccgtcagataatatgttttgccacatagaaactcttaccgtgaatgtactatgcataa |
401264 |
T |
|
| Q |
301 |
catgtaaaggcttctgtctgtg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
401263 |
catgtaaaggcttctgtctgtg |
401242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University