View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_19 (Length: 328)
Name: NF18512_low_19
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 47001873 - 47002176
Alignment:
| Q |
8 |
agatgaaaaggagaaatcacaaatgacttttttcttcaatagattcttcttcttcatcagtttgggaactcttgcagctgtcacaatacttgtttacata |
107 |
Q |
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| T |
47001873 |
agatgagaaggagaaatcacaaatgacttttttcttcaatagattcttcttcttcatcagtttgggaactcttgcagctgtcacaatacttgtttacata |
47001972 |
T |
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| Q |
108 |
caagatgaaattagtagaagttgggcttatggaatatgttctatttctatggtcatagccattttgatattcctatcaggaactaaaagatacagataca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47001973 |
caagatgaaattagtagaagttgggcttatggaatatgttctatttctatggtcatagccattttgatattcctatcaggaactacaagatacagataca |
47002072 |
T |
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| Q |
208 |
agaagagtttgggaagccctattgtccacattttccaagttatcgttgcatcgataaagaaaaggaagatggaacttccatacaatgttggatctctgta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47002073 |
agaagagtttgggaagccctattgtccacattttccaagttatcgttgcatcgataaagaaaaggaagatggaacttccatacaatgttggatctttgta |
47002172 |
T |
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| Q |
308 |
cgag |
311 |
Q |
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|||| |
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| T |
47002173 |
cgag |
47002176 |
T |
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