View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18512_low_2 (Length: 626)

Name: NF18512_low_2
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18512_low_2
NF18512_low_2
[»] chr1 (34 HSPs)
chr1 (16-616)||(8281025-8281626)
chr1 (141-525)||(35109418-35109797)
chr1 (125-566)||(10996771-10997216)
chr1 (176-539)||(32736864-32737229)
chr1 (372-550)||(918336-918514)
chr1 (213-554)||(29651716-29652058)
chr1 (260-554)||(47703787-47704081)
chr1 (386-572)||(22819506-22819693)
chr1 (163-572)||(47098660-47099070)
chr1 (460-554)||(40816668-40816762)
chr1 (220-572)||(47102674-47103026)
chr1 (176-572)||(16124349-16124751)
chr1 (389-501)||(17345424-17345536)
chr1 (220-554)||(13598310-13598645)
chr1 (468-572)||(11031309-11031412)
chr1 (176-554)||(19072789-19073173)
chr1 (176-554)||(19120679-19121063)
chr1 (176-411)||(27104367-27104602)
chr1 (224-280)||(48382607-48382663)
chr1 (516-555)||(6354261-6354300)
chr1 (507-550)||(48382346-48382389)
chr1 (458-554)||(9022758-9022852)
chr1 (485-583)||(25116523-25116623)
chr1 (427-575)||(32889558-32889703)
chr1 (472-551)||(15864726-15864805)
chr1 (163-221)||(17345707-17345766)
chr1 (485-572)||(27104236-27104322)
chr1 (124-203)||(48591013-48591092)
chr1 (124-203)||(48600708-48600787)
chr1 (163-221)||(50521291-50521350)
chr1 (220-341)||(775584-775706)
chr1 (475-547)||(2210624-2210697)
chr1 (181-281)||(9023956-9024059)
chr1 (258-341)||(9476211-9476295)
[»] chr2 (28 HSPs)
chr2 (215-604)||(28770576-28770964)
chr2 (213-604)||(3277908-3278294)
chr2 (213-554)||(2869544-2869886)
chr2 (360-590)||(18674216-18674447)
chr2 (123-411)||(16388465-16388760)
chr2 (299-554)||(14698861-14699112)
chr2 (420-514)||(15903782-15903876)
chr2 (124-221)||(16388259-16388355)
chr2 (163-572)||(33528459-33528868)
chr2 (213-572)||(13569234-13569591)
chr2 (220-554)||(33118048-33118380)
chr2 (213-554)||(8390001-8390341)
chr2 (163-554)||(31055892-31056288)
chr2 (220-572)||(34388771-34389113)
chr2 (310-554)||(2837881-2838124)
chr2 (213-554)||(39482836-39483178)
chr2 (475-572)||(21630111-21630207)
chr2 (423-572)||(41586385-41586532)
chr2 (475-572)||(17865371-17865467)
chr2 (176-554)||(8039923-8040309)
chr2 (163-341)||(20522070-20522254)
chr2 (310-499)||(1345448-1345635)
chr2 (537-572)||(11049487-11049522)
chr2 (360-511)||(27139853-27140004)
chr2 (438-493)||(35397639-35397694)
chr2 (476-554)||(10707104-10707182)
chr2 (455-493)||(27149207-27149245)
chr2 (476-572)||(23078306-23078400)
[»] chr4 (30 HSPs)
chr4 (258-583)||(34670488-34670810)
chr4 (124-572)||(37781673-37782126)
chr4 (124-616)||(873307-873809)
chr4 (217-551)||(42599429-42599762)
chr4 (176-572)||(10047242-10047643)
chr4 (438-572)||(5112366-5112499)
chr4 (370-557)||(39593789-39593974)
chr4 (141-280)||(4956015-4956157)
chr4 (163-520)||(1983187-1983546)
chr4 (297-465)||(8114679-8114843)
chr4 (358-493)||(18912276-18912411)
chr4 (386-572)||(39774140-39774325)
chr4 (175-572)||(3777412-3777811)
chr4 (476-554)||(24333978-24334056)
chr4 (475-572)||(5269035-5269131)
chr4 (460-572)||(25861868-25861980)
chr4 (163-341)||(25862085-25862269)
chr4 (213-341)||(39245899-39246028)
chr4 (213-380)||(24333717-24333880)
chr4 (220-326)||(38152517-38152623)
chr4 (476-554)||(3793932-3794010)
chr4 (220-341)||(54867096-54867218)
chr4 (475-572)||(6743250-6743345)
chr4 (513-550)||(42684974-42685011)
chr4 (437-524)||(36175236-36175321)
chr4 (221-347)||(5147590-5147717)
chr4 (220-411)||(16630675-16630865)
chr4 (180-245)||(42234512-42234574)
chr4 (362-411)||(4956232-4956281)
chr4 (438-554)||(18377489-18377604)
[»] scaffold0076 (1 HSPs)
scaffold0076 (124-411)||(15983-16265)
[»] chr6 (19 HSPs)
chr6 (151-566)||(98998-99412)
chr6 (163-566)||(33721399-33721804)
chr6 (150-577)||(1114931-1115361)
chr6 (163-554)||(31979363-31979757)
chr6 (258-572)||(24435806-24436117)
chr6 (163-547)||(10077027-10077412)
chr6 (420-554)||(14521784-14521919)
chr6 (427-554)||(31936695-31936820)
chr6 (460-572)||(5572078-5572188)
chr6 (362-537)||(30517998-30518172)
chr6 (213-339)||(22963605-22963732)
chr6 (213-339)||(23824661-23824788)
chr6 (220-326)||(5017547-5017653)
chr6 (475-554)||(21801196-21801275)
chr6 (163-220)||(31077146-31077203)
chr6 (176-554)||(18232708-18233091)
chr6 (220-284)||(4629865-4629929)
chr6 (150-221)||(27165539-27165611)
chr6 (213-281)||(30519145-30519213)
[»] scaffold0016 (1 HSPs)
scaffold0016 (300-566)||(102334-102598)
[»] chr8 (25 HSPs)
chr8 (263-590)||(31513148-31513466)
chr8 (386-554)||(7493025-7493193)
chr8 (427-554)||(19752246-19752372)
chr8 (386-572)||(3051197-3051382)
chr8 (299-495)||(9054748-9054942)
chr8 (163-554)||(5702332-5702730)
chr8 (507-550)||(33503697-33503740)
chr8 (220-572)||(4696443-4696781)
chr8 (297-510)||(8863521-8863732)
chr8 (257-554)||(23799428-23799725)
chr8 (386-511)||(5990456-5990581)
chr8 (458-554)||(28307711-28307807)
chr8 (214-280)||(11771855-11771921)
chr8 (476-554)||(26403081-26403159)
chr8 (176-221)||(5990748-5990793)
chr8 (164-221)||(9055025-9055082)
chr8 (150-214)||(7493264-7493328)
chr8 (379-551)||(14601233-14601405)
chr8 (127-214)||(8863833-8863920)
chr8 (199-250)||(32916304-32916355)
chr8 (220-380)||(26403256-26403415)
chr8 (221-280)||(28387895-28387955)
chr8 (206-288)||(34477335-34477417)
chr8 (173-221)||(28307421-28307469)
chr8 (386-500)||(34477128-34477239)
[»] chr5 (21 HSPs)
chr5 (180-565)||(5611009-5611398)
chr5 (360-557)||(30899918-30900114)
chr5 (426-572)||(28832374-28832519)
chr5 (423-511)||(2630345-2630433)
chr5 (386-572)||(11181667-11181852)
chr5 (163-550)||(42127266-42127656)
chr5 (158-550)||(34842449-34842843)
chr5 (176-554)||(17003811-17004193)
chr5 (427-554)||(31300447-31300574)
chr5 (176-315)||(3880166-3880307)
chr5 (460-572)||(19588896-19589007)
chr5 (438-572)||(24553362-24553495)
chr5 (176-221)||(2630087-2630132)
chr5 (460-554)||(10281901-10281997)
chr5 (421-496)||(6741964-6742039)
chr5 (183-221)||(28537489-28537527)
chr5 (124-221)||(30899668-30899765)
chr5 (398-492)||(33030854-33030948)
chr5 (476-572)||(11916807-11916901)
chr5 (220-341)||(24553569-24553691)
chr5 (220-284)||(12084298-12084361)
[»] chr3 (32 HSPs)
chr3 (180-565)||(21156296-21156685)
chr3 (220-554)||(18552726-18553058)
chr3 (163-572)||(40592606-40593020)
chr3 (176-616)||(29100033-29100472)
chr3 (353-543)||(44658345-44658536)
chr3 (398-554)||(3328198-3328355)
chr3 (439-575)||(8126761-8126895)
chr3 (124-480)||(25516791-25517153)
chr3 (258-554)||(1736145-1736442)
chr3 (398-572)||(3323515-3323689)
chr3 (372-604)||(5366113-5366348)
chr3 (220-554)||(48438126-48438461)
chr3 (460-553)||(25795931-25796024)
chr3 (163-572)||(8370313-8370724)
chr3 (386-504)||(21353639-21353757)
chr3 (163-554)||(30709630-30710028)
chr3 (475-572)||(47923728-47923824)
chr3 (460-572)||(24694990-24695101)
chr3 (163-239)||(47924028-47924106)
chr3 (426-572)||(1417315-1417460)
chr3 (476-554)||(3715843-3715921)
chr3 (258-472)||(4386851-4387065)
chr3 (220-572)||(26298900-26299250)
chr3 (213-281)||(34482106-34482174)
chr3 (460-520)||(40844801-40844861)
chr3 (516-547)||(10274589-10274620)
chr3 (476-554)||(47649737-47649815)
chr3 (460-554)||(25929237-25929332)
chr3 (220-281)||(25929556-25929617)
chr3 (220-284)||(8126613-8126677)
chr3 (258-341)||(21711173-21711257)
chr3 (220-284)||(27026857-27026920)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-590)||(14548-14964)
[»] chr7 (24 HSPs)
chr7 (220-572)||(20284001-20284351)
chr7 (398-554)||(5817122-5817278)
chr7 (220-554)||(29159715-29160050)
chr7 (258-447)||(28617184-28617372)
chr7 (220-554)||(55860-56194)
chr7 (213-552)||(2647551-2647888)
chr7 (389-544)||(3047335-3047489)
chr7 (398-572)||(23402848-23403022)
chr7 (427-572)||(9185009-9185153)
chr7 (427-572)||(9189842-9189986)
chr7 (427-554)||(2580508-2580635)
chr7 (398-572)||(9235417-9235591)
chr7 (163-571)||(49091512-49091924)
chr7 (220-554)||(4796520-4796852)
chr7 (424-550)||(45685601-45685727)
chr7 (220-554)||(33332302-33332635)
chr7 (354-552)||(761219-761416)
chr7 (176-341)||(9190071-9190241)
chr7 (474-572)||(46516140-46516237)
chr7 (213-341)||(46516373-46516502)
chr7 (124-281)||(27984294-27984460)
chr7 (214-288)||(23575488-23575564)
chr7 (458-511)||(27984633-27984686)
chr7 (176-284)||(9185284-9185396)
[»] scaffold0006 (2 HSPs)
scaffold0006 (220-554)||(5595-5930)
scaffold0006 (220-572)||(2404-2756)
[»] scaffold0036 (1 HSPs)
scaffold0036 (163-284)||(85535-85659)
[»] scaffold0148 (1 HSPs)
scaffold0148 (213-356)||(10634-10778)
[»] scaffold0078 (1 HSPs)
scaffold0078 (420-554)||(23643-23777)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 16 - 616
Target Start/End: Original strand, 8281025 - 8281626
Alignment:
Q  16 tgaagcacatatattcttctcaaattaggcggatcgcagtgttagacacaagtttgtgtttgacagttgacgcaacatgatattgatatatacgattata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8281025 tgaagcacatatattcttctcaaattaggcggatcgcagtgttggacacaagtttgtgtttgacaattgacgcaacatgatattgatatatacgattata 8281124  T
Q  116 ttgaattatgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8281125 ttgaattatgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaagcaa 8281224  T
Q  216 caacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgtt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8281225 caacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacagagataagcaagaagggaaggagacaacacaccaacattgtt 8281324  T
Q  316 tacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8281325 tacccagttcgatgcaaaatgacctactttggaggaaagagaataactctctgatccactatgataagaatgatacaaatatgttacaagaaattaacat 8281424  T
Q  416 attcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttatt 515  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8281425 aatcgctcacaaagaacaaattctaatttctatcaattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagtttttttatt 8281524  T
Q  516 cttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa-ttccctcctt 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8281525 cttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaagttctctcctt 8281624  T
Q  615 tg 616  Q
    ||    
T  8281625 tg 8281626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 141 - 525
Target Start/End: Complemental strand, 35109797 - 35109418
Alignment:
Q  141 aataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagta 240  Q
    |||||| | ||||||| ||||||||||||||||  |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||     
T  35109797 aataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatgca--aagtagtctcaagcaacaacaaacagacctagatctaagtg 35109700  T
Q  241 tgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacct 340  Q
     | | ||||| || | ||||||| |||| |||||||| ||| |||||| ||| || |||||||||| | ||||||||| ||||| | | |||||||||||    
T  35109699 cggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagagaaagaaacaacacaccgatattgtttactcagtttggtccaaaatgacct 35109600  T
Q  341 actttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattcta 440  Q
    | | | ||||  |||||  ||||||| ||| |||||||||||||  |||||||||| |||||||||||||| | ||   ||||||||||||||||   ||    
T  35109599 aatct-gagg--agagacaagctctctgatccactatgataagatagatacaaataggttacaagaaattagcttaaaagctcacaaagaacaaacctta 35109503  T
Q  441 atttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 525  Q
    ||||||| ||| | || ||||||| | |||||||||||||||| | ||||||| ||||||||||| |||||||| ||||||||||    
T  35109502 atttctacccaattttcaagtcacacacactcacaatgaatcctacgagaaaatactaaaggaagcttttttatccttcctctaa 35109418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 125 - 566
Target Start/End: Original strand, 10996771 - 10997216
Alignment:
Q  125 gttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaaca 224  Q
    ||||||||||| ||| || ||| | ||||||| |||||| || |||||| ||||| ||||||||||||||||||||||||| ||||||  |||||||| |    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagtagcctcaaggtacaacaaata 10996870  T
Q  225 gacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaaggg-------aaggagacaacacaccaacattgttta 317  Q
    | |||| |  ||||| |||||||||| || |  || | ||| |||||| |||||||  || ||  |       ||  | |||||||||||| ||||||||    
T  10996871 gtcctaaaattaagtgtgaagcaacaccacatgcagattcatagcaacgaagataaaaaaaaaaagtggagaaaattaaacaacacaccaatattgttta 10996970  T
Q  318 cccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatat 417  Q
    ||||||||| |  | ||||||||||| | |  |||||  |    ||||  ||| |||||  |||||| |||||||||||||||||||||||||||| ||     
T  10996971 cccagttcggtttagaatgacctactcttggtgaaagcaa----ctctttgatccacta--ataagagtgatacaaatatgttacaagaaattaacttaa 10997064  T
Q  418 tcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaa-cactaaaggaagatttttt--at 514  Q
      | | ||||| ||||||  |||||||||| ||||| || ||||||||| |||||||  ||||||| || |||||| |||||||||||| ||||||  ||    
T  10997065 aagataacaaataacaaaccctaatttctacccatttttcaagtcaccctcactcacgttgaatcctaaaagaaaaacactaaaggaagcttttttttat 10997164  T
Q  515 tcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 566  Q
      |||||||||||| || |||||| |||||||||||| ||||| ||||||||    
T  10997165 cattcctctaatgacatttcactatccaaggtgtttaaaaatgtttcccaac 10997216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 176 - 539
Target Start/End: Complemental strand, 32737229 - 32736864
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaa 271  Q
    ||||||||| || ||||||||  ||||||| |||||||||||||||    |||||| ||||||||||| |||||||||| || | | ||||||||||| |    
T  32737229 aaaggaagtggtgatcaatgagcaaagtagcctcaagcaacaacaacgaaacagacttagatctaagtgtgaagcaacaccacaaatataatcaaagcta 32737130  T
Q  272 caaagataagcaagaag-ggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgat 370  Q
    ||| || ||| |||||| | ||| | || | |||| || ||||| ||| ||| ||||| |||||||||||||| ||  ||| |||||  | ||||| |||    
T  32737129 caatgaaaagaaagaagagaaagaaaactagacacaaatattgtgtactcagatcgatccaaaatgacctactctg--ggagagagagaaactctctgat 32737032  T
Q  371 tcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcac 470  Q
      |||||||| |   ||||||||| | ||||||| |||||| | ||   | ||| ||||||||||  |||||||||| ||||| || |||||| |  |||    
T  32737031 caactatgatgaaggtgatacaaagaggttacaaaaaattagcttaaaagttcataaagaacaaaccctaatttctacccatttttcaagtcatcgacac 32736932  T
Q  471 tcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactac 539  Q
    ||||||||||||| |||||||||| ||||||||||   ||| ||  |||||||||||||||||||||||    
T  32736931 tcacaatgaatcctaagagaaaaccctaaaggaag-gatttgatcattcctctaatgagatctcactac 32736864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 372 - 550
Target Start/End: Complemental strand, 918514 - 918336
Alignment:
Q  372 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtc-acccgcac 470  Q
    ||||||||||||| ||||||||| || ||||||||||||| | ||    |||||||||||||||   ||||||||| ||||| || || || || |  ||    
T  918514 cactatgataagagtgatacaaagatattacaagaaattatcttacaaactcacaaagaacaaaccataatttctacccatttttcaattccactcaaac 918415  T
Q  471 tcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
     |||||||||||| ||||||||||| ||| ||||| ||||  || ||||||||||||||||||||||||||||| |||||    
T  918414 ccacaatgaatcctaagagaaaacaataatggaagcttttg-atgcttcctctaatgagatctcactacccaagatgttt 918336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 213 - 554
Target Start/End: Original strand, 29651716 - 29652058
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| |||||||| ||||||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| ||    
T  29651716 caacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagat 29651815  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    | || |||||||||| | ||| |||||||| | ||| ||  |||||  ||| |||| || ||||||||| | | || ||||||    |||||||||||||    
T  29651816 ttttgacccagttcggtccaatatgacctaatctggggg--agagagcagcactccaatccactatgatgaaagtgttacaaaagaattacaagaaatta 29651913  T
Q  412 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagat 507  Q
    || |||  ||| ||| ||||||||   |||||||||| ||||  |||  ||||||| |||||   | ||||||||| |||||||||||| |||||||  |    
T  29651914 acttataagcttacacaagaacaagacctaatttctacccat--tttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaaact 29652011  T
Q  508 tttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||| || |||||  |  ||| |||||||||||||||||||||||||    
T  29652012 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 554
Target Start/End: Complemental strand, 47704081 - 47703787
Alignment:
Q  260 taatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaa 358  Q
    |||||||||||| |||||||||||| ||| | ||||| | |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |    
T  47704081 taatcaaagcaataaagataagcaatgaaagaaaggaaaaaacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca 47703982  T
Q  359 tagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattattt 457  Q
      ||||||| || ||||||||| | | || ||||||    ||||||||||||| | ||   ||| ||| ||||||||   |||||||||| ||||| | |    
T  47703981 --gctctccaatccactatgatgaaagtgttacaaaagaattacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccattttgt 47703884  T
Q  458 aagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
      ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||||||  ||||  |  ||| |||||||||||||||||||||||||    
T  47703883 --gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagtttttttatcattccaatggtgaaatctcactacccaaggtgtttacaa 47703787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 386 - 572
Target Start/End: Original strand, 22819506 - 22819693
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 485  Q
    ||||||||||  |||||||||||||| | | || |||||||||||| ||    ||||||||| ||||| || ||||||||| ||||| |||||||||| |    
T  22819506 tgatacaaatgagttacaagaaattagctttttagctcacaaagaataagacataatttctaaccatttttcaagtcacccacactctcaatgaatccta 22819605  T
Q  486 agag--aaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||  ||||||| |||||||| ||||| || |||||  |  ||| || | |||||||||||||||||| |||| |||||||| |||||    
T  22819606 agagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatgtaactacccaaggtgtttac-aatgtttcccaacccaaga 22819693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 572
Target Start/End: Complemental strand, 47099070 - 47098660
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 257  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||| ||||||||    ||||||||| |||||||| |  ||||||| || |      
T  47099070 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagtaacaacaacaaaacagacctaaatctaagtgtagagcaacaccacaag 47098972  T
Q  258 cataatcaaagcaacaaagataagcaag-aagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 356  Q
     ||||||||||||| ||||||||||||  || | |||||   |||||||||| |||||| |||||||||| | ||| |||||| | | ||| ||| ||||    
T  47098971 tataatcaaagcaataaagataagcaatcaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccgaatctgggggagagag 47098872  T
Q  357 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattat 455  Q
     |  || |||| || ||||| ||| | | || |||||  | |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| |    
T  47098871 ca--gccctccaatccactaagatgaaagtgttacaatga-gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatt-t 47098776  T
Q  456 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaa 555  Q
    | |  |||||| ||||| ||||||| || |||| ||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| ||    
T  47098775 tcacatcacccacactctcaatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aa 47098677  T
Q  556 tggttcccaacacaaga 572  Q
    || |||||||| |||||    
T  47098676 tgtttcccaacccaaga 47098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 460 - 554
Target Start/End: Complemental strand, 40816762 - 40816668
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  40816762 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 220 - 572
Target Start/End: Complemental strand, 47103026 - 47102674
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaag-aagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |   ||||||||||||| ||||||||||||  || | |||||   |||||||||| |||||| ||    
T  47103026 aaacagacctaaatctaagtgtagagcaacaccacaagtataatcaaagcaataaagataagcaatcaaagaaaggaacaaacacaccaaaattgttgac 47102927  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| |||||||| | | | ||| |||| |  ||  ||| || ||||| ||| | |||| |||||  | |||||||||||||||| |||     
T  47102926 ccagttcggtccaatatgacctaatctaggggagagagca--gccatccaatccactaagatgaaaatgttacaatga-gttacaagaaattaacttata 47102830  T
Q  419 cgctcacaaa-gaacaaattctaatttctat--ccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttatt 515  Q
     ||  ||||| |||||| | |||||||||||  ||||| || |  |||| | ||||| |||||||||| |||| ||||||| |||| ||| ||||| ||     
T  47102829 agcatacaaaagaacaagtcctaatttctatacccatttttcatatcactcacactctcaatgaatcctaagaaaaaacacaaaagaaagctttttgatc 47102730  T
Q  516 cttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    |||||  | |||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  47102729 cttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47102674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 572
Target Start/End: Complemental strand, 16124751 - 16124349
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagta-gtctcaagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 269  Q
    ||||||||| |||||||||||||||| |  ||| |||||||||||||     |||||||||||||||| | |  ||||||| || | |||||||||||||    
T  16124751 aaaggaagtggtaatcaatgaataaaatgtgtc-caagcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaaacataatcaaagc 16124653  T
Q  270 aacaaagataagcaag--aagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctcc 367  Q
    || |||||||||| |   |||  |||||   |||||||||| |||||| || ||||||| | ||| |||||||| | ||| ||| |||| |  || ||||    
T  16124652 aataaagataagctatgaaagaaaaggaacaaacacaccaagattgttgactcagttcggtccaatatgacctaatctgggggagagagca--gccctcc 16124555  T
Q  368 gattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcaccc 466  Q
     || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| ||||||||   |||||||||| ||||| | |  || ||||    
T  16124554 aatccactatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacataagaacaagacctaatttctacccattttgt--gttaccc 16124457  T
Q  467 gcactcacaat---gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttccc 563  Q
     ||||  ||||   |||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||    
T  16124456 acactttcaataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttccc 16124358  T
Q  564 aacacaaga 572  Q
    ||| |||||    
T  16124357 aacccaaga 16124349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 501
Target Start/End: Complemental strand, 17345536 - 17345424
Alignment:
Q  389 tacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaaga 488  Q
    ||||||| || |||||||||||| ||||   || |||||||||||||  |||||||||| ||||| |||||||||||| |||||  ||||||||  ||||    
T  17345536 tacaaatgtgctacaagaaattagcataagagcccacaaagaacaaaacctaatttctacccattttttaagtcacccacactcttaatgaatcttaaga 17345437  T
Q  489 gaaaacactaaag 501  Q
    |||||||| ||||    
T  17345436 gaaaacacaaaag 17345424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 554
Target Start/End: Original strand, 13598310 - 13598645
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  13598310 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 13598409  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| |||||||| | ||| ||  |||||  ||| || | || ||||||||| | | || ||||||   | |||||||||||| | |||     
T  13598410 ccagttcggtccaatatgacctaatctggggg--agagagcagcccttcaatccactatgatgaaagtgttacaaaagagatacaagaaattagcttata 13598507  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca---atgaatccaaagagaaaacactaaaggaagattttttat 514  Q
     ||| ||| ||||||||    |||||||||  |||  |||  ||||||| ||||| ||   |||||||| |||||||||||| |||||||| ||||| ||    
T  13598508 agcttacacaagaacaagacttaatttctactcat--tttgtgtcacccacactctcaatgatgaatcctaagagaaaacacaaaaggaagctttttgat 13598605  T
Q  515 tcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
     |||||  |  ||| |||||||||||||||||||||||||    
T  13598606 ccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 572
Target Start/End: Complemental strand, 11031412 - 11031309
Alignment:
Q  468 cactcacaatgaatccaaagagaaaa-cactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 566  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||||| || |||||  ||||||   ||||||||||| |||||||||||||| ||||||||    
T  11031412 cactcacaatgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaa--ctcactacccacggtgtttacaaatgtttcccaac 11031315  T
Q  567 acaaga 572  Q
     |||||    
T  11031314 ccaaga 11031309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 176 - 554
Target Start/End: Original strand, 19072789 - 19073173
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa------cagacctagatctaagtatgaagcaacatcagacacataatcaaag 268  Q
    |||||||||||||||||||  ||||||| ||||| ||||||||||||       |||||||| |||||||| |  ||||||| || |  ||||||||||     
T  19072789 aaaggaagtagtaatcaatagataaagt-gtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaa 19072887  T
Q  269 caacaaagataagcaa-gaagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctc 366  Q
    ||| |||||||||||| ||| | |||||   ||||||||||  |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  ||||||    
T  19072888 caataaagataagcaatgaaagaaaggaacaaacacaccaaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gctctc 19072985  T
Q  367 cgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacc 465  Q
    | || ||||| ||| | | || ||||||   |||||||||||||| | |||  ||| ||||| ||||||   |||||||||| ||||| | |  |||||     
T  19072986 caatccactaagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaatacctaatttctacccattttgt--gtcact 19073083  T
Q  466 cgcactcacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    | ||||| ||| |||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| |||||||||||||||    
T  19073084 cacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaa 19073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 176 - 554
Target Start/End: Original strand, 19120679 - 19121063
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa------cagacctagatctaagtatgaagcaacatcagacacataatcaaag 268  Q
    |||||||||||||||||||  ||||||| ||||| ||||||||||||       |||||||| |||||||| |  ||||||| || |  ||||||||||     
T  19120679 aaaggaagtagtaatcaatagataaagt-gtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcataatcaaaa 19120777  T
Q  269 caacaaagataagcaa-gaagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctc 366  Q
    ||| |||||||||||| ||| | |||||   ||||||||||  |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  ||||||    
T  19120778 caataaagataagcaatgaaagaaaggaacaaacacaccaaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gctctc 19120875  T
Q  367 cgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacc 465  Q
    | || ||||| ||| | | || ||||||   |||||||||||||| | |||  ||| ||||| ||||||   |||||||||| ||||| | |  |||||     
T  19120876 caatccactaagatgaaagtgttacaaaagagttacaagaaattagcttataagcttacaaaagaacaatacctaatttctacccattttgt--gtcact 19120973  T
Q  466 cgcactcacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    | ||||| ||| |||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| |||||||||||||||    
T  19120974 cacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaa 19121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 411
Target Start/End: Complemental strand, 27104602 - 27104367
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa-cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 273  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||| |||||||| |||||||| |  ||||||| || |  |||||||||||||| |    
T  27104602 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaata 27104504  T
Q  274 aagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattc 372  Q
    ||||||||||| |||   |||||   |||||||||| |||||| || ||||||| | ||| || ||||| | ||| ||  |||||  |||||||| || |    
T  27104503 aagataagcaatgaaataaaggaacaaacacaccaagattgttgacacagttcggtccaatataacctaatctggggg--agagagcagctctccaatcc 27104406  T
Q  373 actatgataagaatgatacaaatatgttacaagaaatta 411  Q
    |||||||| | | || ||||||   ||||||||||||||    
T  27104405 actatgatgaaagtgttacaaaagagttacaagaaatta 27104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 48382663 - 48382607
Alignment:
Q  224 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 280  Q
    |||||||||||||||| |||||||||| || | ||||||| ||||||||||||||||    
T  48382663 agacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataa 48382607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 516 - 555
Target Start/End: Complemental strand, 6354300 - 6354261
Alignment:
Q  516 cttcctctaatgagatctcactacccaaggtgtttacaaa 555  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  6354300 cttcctctaatgagatctcactacccaaagtgtttacaaa 6354261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 550
Target Start/End: Complemental strand, 48382389 - 48382346
Alignment:
Q  507 ttttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  48382389 ttttttatccttcctttaatgagatctcactacccaaggtgttt 48382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 554
Target Start/End: Complemental strand, 9022852 - 9022758
Alignment:
Q  458 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||| || |||||||||||||||| ||||||||  ||| ||||||| |||||||| |||||  |  ||| ||||||||||  |||||||||||||    
T  9022852 aagtcaaccacactcacaatgaatcctaagagaaa--actcaaggaagcttttttatccttccaatggtgaaatctcactacgaaaggtgtttacaa 9022758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 583
Target Start/End: Complemental strand, 25116623 - 25116523
Alignment:
Q  485 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactaccc-aaggtgtttacaaatggttcccaacacaagaaa-aaactctc 582  Q
    ||||||||||||||||| ||  ||||| || ||||   |||||| |||||||||||| || ||||||||||||| |||||||| ||| ||| ||||||||    
T  25116623 aagagaaaacactaaagaaatttttttaatccttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctc 25116524  T
Q  583 a 583  Q
    |    
T  25116523 a 25116523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 575
Target Start/End: Original strand, 32889558 - 32889703
Alignment:
Q  427 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 526  Q
    |||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| ||| ||||  |||| |  |||||  |  |    
T  32889558 aagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac-aaaagaag-cttttgaaccttccaatggt 32889655  T
Q  527 gagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaa 575  Q
    || ||||||||||||||||||||||| |||| |||||||| ||| ||||    
T  32889656 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaaaaaa 32889703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 551
Target Start/End: Original strand, 15864726 - 15864805
Alignment:
Q  472 cacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 551  Q
    |||||||||||| |||| |||||| || || |||  |||| ||  || ||||||||||||||||||||||||| ||||||    
T  15864726 cacaatgaatcctaagaaaaaacaatagagaaagcattttgatcatttctctaatgagatctcactacccaagatgttta 15864805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 17345766 - 17345707
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaat-aaagtagtctcaagcaacaacaa 221  Q
    |||||||| ||  ||||||||||||||||||||| | ||||||| |||||||||||||||    
T  17345766 agatgtgtggagcaaaggaagtagtaatcaatgagtaaaagtagcctcaagcaacaacaa 17345707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 27104322 - 27104236
Alignment:
Q  485 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    |||||||||||| |||||||| ||||| ||||||||  |  ||| |||||||||||||||||| |||  |||| |||||||| |||||    
T  27104322 aagagaaaacacaaaaggaagctttttgattcttccaatggtgaaatctcactacccaaggtgctta-taatgtttcccaacccaaga 27104236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 48591092 - 48591013
Alignment:
Q  124 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagt 203  Q
    |||||||||||||||  |||||| | | ||||| |||||||||||||  | |||| ||| |||||||||||||| |||||    
T  48591092 tgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48591013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 48600787 - 48600708
Alignment:
Q  124 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagt 203  Q
    |||||||||||||||  |||||| | | ||||| |||||||||||||  | |||| ||| |||||||||||||| |||||    
T  48600787 tgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaagtaaaagaaatagtaatcaatgaacaaagt 48600708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 50521350 - 50521291
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaat-aaagtagtctcaagcaacaacaa 221  Q
    |||||||| || |||||||||| ||||||||||| | ||||||||||||| |||||||||    
T  50521350 agatgtgtggagtaaaggaagtggtaatcaatgagtaaaagtagtctcaaacaacaacaa 50521291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 775584 - 775706
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||| ||| |||||| ||    
T  775584 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacatcaagattgttgac 775683  T
Q  319 ccagttcgatgcaaaatgaccta 341  Q
    ||| |||| | ||| ||||||||    
T  775684 ccaattcggtccaatatgaccta 775706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 547
Target Start/End: Original strand, 2210624 - 2210697
Alignment:
Q  475 aatgaatccaaagagaaaacactaaaggaag-attttttattcttcctctaatgagatctcactacccaaggtg 547  Q
    ||||||| | ||||||||||| ||||| ||  |||||| ||  || ||||||||||||||||||||||||||||    
T  2210624 aatgaattctaagagaaaacaataaagaaaacatttttgatcatttctctaatgagatctcactacccaaggtg 2210697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 9024059 - 9023956
Alignment:
Q  181 aagtagtaatcaatgaataaagtagtctcaagcaa---caacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaaga 277  Q
    |||| |||||||||| ||||||||| | |||||||   ||||||||| ||||| |||||||| |  ||||||| || |  ||||||||| |||| |||||    
T  9024059 aagtggtaatcaatggataaagtagccccaagcaataacaacaaacatacctaaatctaagtgtatagcaacaccacaagcataatcaatgcaataaaga 9023960  T
Q  278 taag 281  Q
    ||||    
T  9023959 taag 9023956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 9476211 - 9476295
Alignment:
Q  258 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 341  Q
    |||||||||||||| |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  9476211 cataatcaaagcaaaaaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 9476295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 8e-69; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 215 - 604
Target Start/End: Complemental strand, 28770964 - 28770576
Alignment:
Q  215 acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaa-ggagacaacacaccaacattg 313  Q
    |||||||| |||||||||||||||| |||||||||| || |  |||||||||||||| ||| ||||  |||||| ||| ||| |||| ||||||| |||     
T  28770964 acaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaaaggaaacaagacaccaatattt 28770865  T
Q  314 tttacccagttcgatgcaaaa-tgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaa 412  Q
    |||||| | | || |  |||| ||||||||| ||||||| |||| |  |||||||||| | ||| ||||||||||||||||| || |||||||||||||     
T  28770864 tttaccta-tacggtctaaaaatgacctactctggaggatagagca--gctctccgatcctctacgataagaatgatacaaagatattacaagaaattag 28770768  T
Q  413 catattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttt 512  Q
    | ||   |||||||||||||||| ||||||||||| ||||| || ||||||  | ||||| |||||||||| ||||||||||||||||||||  ||||||    
T  28770767 cttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaacactaaaggaaactttttt 28770668  T
Q  513 attcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa 604  Q
    || ||||  |||||||||||||||||||||||||||||||||||| || |||||  |||||||||| |||| ||||||  | ||||||||||    
T  28770667 atccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaaaaaacactcaccaaagacactcaaccctaaa 28770576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 213 - 604
Target Start/End: Original strand, 3277908 - 3278294
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacatt 312  Q
    |||||||||| ||| |||||||||||| ||||||||||  | | ||||| ||||||||| ||||||||| || ||| || ||| | |||||| |||||||    
T  3277908 caacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataagaaataagagagggaaaaaacacatcaacatt 3278007  T
Q  313 gtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaa 412  Q
    |||||| || |||  | |||||||||||||| ||||||| |||| ||  | || ||||  |||||||| ||||||||| ||| | |||| |||||||||     
T  3278008 gtttactcatttccgtccaaaatgacctactatggaggagagagcat--cacttcgatctactatgatgagaatgata-aaagaggttataagaaattag 3278104  T
Q  413 catattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttt 512  Q
    | ||    ||||||| ||||||||||  ||||||   |||| || || |||| | ||||||||||||| || |||||||||| |||||||||| |||||     
T  3278105 cttaaaacctcacaa-gaacaaattccgatttcttctcatttttcaattcactcacactcacaatgaaccctaagagaaaacgctaaaggaagttttttg 3278203  T
Q  513 attcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa 604  Q
    || | |||| |||||| ||||||||| |||||||||||||||||| || ||||| |||| | || |||||||||| ||| | ||||||||||    
T  3278204 atccgtcctataatgaaatctcactatccaaggtgtttacaaatgttttccaacccaag-agaatctctcatcaacgatactcaaccctaaa 3278294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 213 - 554
Target Start/End: Complemental strand, 2869886 - 2869544
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaag-aagggaaggagacaa-cacaccaaca 310  Q
    |||||||||| ||||||| |||||||| |  ||||||| || |  |||| ||||||||||||||||||||||  || |||||   |||| |||||||| |    
T  2869886 caacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaacaaagataagcaaataaaggaagagaacaaacacaccaata 2869787  T
Q  311 ttgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatt 410  Q
    |||||||||||||||| | ||| |||||||||| | | ||| ||||  ||||||||| || ||||| ||| | | |||||||||   |||||||||||||    
T  2869786 ttgtttacccagttcggtccaatatgacctactctaggggagagag--tagctctccaatccactaagatgaaagtgatacaaaggagttacaagaaatt 2869689  T
Q  411 aacatattcgctcacaaagaacaaattc-taatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 509  Q
    | | ||   ||||||||||||||||  | ||||||||| ||||| || ||||||||| ||||| |||||||||| ||||||||||||||| ||||| |||    
T  2869688 agcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactctcaatgaatcctaagagaaaacactaacggaagcttt 2869589  T
Q  510 tttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    || ||||||||  |   || |||||||||||||| ||||||||||    
T  2869588 ttgattcttccaatggcgaaatctcactacccaatgtgtttacaa 2869544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 360 - 590
Target Start/End: Complemental strand, 18674447 - 18674216
Alignment:
Q  360 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 459  Q
    |||||||||||  ||||||| |||| |||||| ||   ||||||||||||||   ||   ||||||||||||||||   ||||||||||||||| || ||    
T  18674447 agctctccgatctactatgacaagagtgataccaaggggttacaagaaattagtttaaaagctcacaaagaacaaaccataatttctatccatttttcaa 18674348  T
Q  460 gtcacccgcactca-caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatgg 558  Q
    ||||||| ||||||  ||||||||  ||||||||||| ||||||||| ||||| || ||| |  |||||| |||||||| | |||||||||||| ||||     
T  18674347 gtcacccacactcataaatgaatcataagagaaaacattaaaggaagctttttgatcctt-caataatgaaatctcactgctcaaggtgtttacgaatgt 18674249  T
Q  559 ttcccaacacaagaa-aaaactctcatcaaaga 590  Q
    |||||||| ||||||  ||||||||| ||||||    
T  18674248 ttcccaacccaagaattaaactctcaccaaaga 18674216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 123 - 411
Target Start/End: Complemental strand, 16388760 - 16388465
Alignment:
Q  123 atgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca-------- 214  Q
    ||||||||||||||||| |||||| | | ||||| ||||||||||||| ||  |||   ||||||||||||||| |||||||||||||||||            
T  16388760 atgttgtgaattcaaacaaataatcacatcaata-aacttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaagcagcagcaac 16388662  T
Q  215 -acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattg 313  Q
     ||||||||||||||||||| || || ||||||||||  | |  ||||  |||||||| |||||||||  |||| ||| | | |||||||||||| ||||    
T  16388661 aacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaataaagataagagagaaaggaggaaaacaacacaccaatattg 16388562  T
Q  314 tttacccagttcgatgc-aaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    ||||||||||| | | | ||||||||||||| | ||||  |||||  ||||||||  | |||| ||||||||  |||| ||| | ||||||||||||||    
T  16388561 tttacccagtttggtccaaaaatgacctactctagagg--agagagcagctctcctttccactttgataagagagatagaaagaggttacaagaaatta 16388465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 299 - 554
Target Start/End: Complemental strand, 14699112 - 14698861
Alignment:
Q  299 aacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatg 398  Q
    |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | || | ||||||   |    
T  14699112 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactatgatga-aaggttacaaaagag 14699016  T
Q  399 ttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacact 497  Q
    ||||||||||||| | |||  ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| |||||||||| ||||||||||||     
T  14699015 ttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaatgaatcctaagagaaaacaca 14698918  T
Q  498 aaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||| ||||| || |||||  || ||| |||||||||||||||||||||||||    
T  14698917 aaaggaagctttttgatccttccaatagtgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 420 - 514
Target Start/End: Complemental strand, 15903876 - 15903782
Alignment:
Q  420 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttat 514  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||| ||||| |||||||||| | |||||||||| |||| ||  ||||||||    
T  15903876 gctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactctcaatgaatcctatgagaaaacacaaaagaaatcttttttat 15903782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 16388259 - 16388355
Alignment:
Q  124 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 221  Q
    |||||||||||| ||| |||||| | ||| ||| ||||||||||||| ||  |||| |||||||||||||||||||||||||||||||||| ||||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgata-aacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaa 16388355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 572
Target Start/End: Complemental strand, 33528868 - 33528459
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaac-----aaacagacctagatctaagtatgaagcaacatcagaca 257  Q
    |||||||| ||  ||||||||| |||||||||| |||||||   | |||||||||||     |||||||||||||||||| | |  ||||||| || |      
T  33528868 agatgtgtggagcaaaggaagtggtaatcaatggataaagtgtccccaagcaacaacaacaaaaacagacctagatctaaatgtagagcaacaccacaag 33528769  T
Q  258 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 356  Q
    |||||||||||||| |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||  ||||||||    
T  33528768 cataatcaaagcaataaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatatg--ggaaagag 33528671  T
Q  357 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatt 456  Q
    |  | | |||| || ||||||||| | | || ||||||   |||||||||||||| | |||  |||    ||||||||   |||||||||| ||||  ||    
T  33528670 agcaaccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttataagct----aagaacaagacctaatttctacccat--tt 33528577  T
Q  457 taagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttaca 553  Q
    |  |||||||  ||||   | ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||| ||||||||     
T  33528576 tgtgtcacccaaactctcaataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaatgtgtttac- 33528478  T
Q  554 aatggttcccaacacaaga 572  Q
    |||| |||||||| |||||    
T  33528477 aatgtttcccaacccaaga 33528459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 213 - 572
Target Start/End: Original strand, 13569234 - 13569591
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| |||||| | |||||||||||||  || |||| || |  |||||||||||| |||||||||| ||| ||| | |||||   |||||||||| ||    
T  13569234 caacaaaaaacaggcttagatctaagtatagagaaacaccacaagcataatcaaagc-acaaagataatcaatgaaagaaaggaataaacacaccaaaat 13569332  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    |||| |||||||||| | ||| |||||||| | ||| ||  |||||  |||||||| || ||||||||| | | || ||||||   ||||||||||||||    
T  13569333 tgttgacccagttcggtccaatatgacctaatctggggg--agagagcagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 13569430  T
Q  412 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca--atgaatccaaagagaaaacactaaaggaagatt 508  Q
     | |||  | | ||| ||||||||   |||||||||| || || |||  ||||||| | ||||||  |||||||| |||||||||||| |||||||| ||    
T  13569431 gcttataagtttacacaagaacaagacctaatttctaccctttgttt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctt 13569528  T
Q  509 ttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||| || |||||  |  ||| ||||||||| ||||||||||||  |||| |||||||| |||||    
T  13569529 tttgatccttccaatggtgaaatctcactatccaaggtgttta-taatgtttcccaacccaaga 13569591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 220 - 554
Target Start/End: Original strand, 33118048 - 33118380
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |  ||||||||||| || |||||||||||| ||| | |||||   |||||||||| ||||||  |    
T  33118048 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttggc 33118147  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
     ||||||| | ||| |||||||| ||||| ||| |||| |  || |||| || ||||||||| | |  | ||||||   |||||||||||||| | |||     
T  33118148 tcagttcggtccaatatgacctaatttgggggagagagca--gccctccaatccactatgatgaaagagttacaaaatagttacaagaaattagcttata 33118245  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 517  Q
     ||| ||| ||||||||    ||||||||| ||||| | |  ||||||| ||||| |||||||||  |||||||||||| |||||||| ||||| || ||    
T  33118246 agcttacacaagaacaagacttaatttctacccattttgt--gtcaccctcactctcaatgaatcttaagagaaaacacaaaaggaagctttttgatcct 33118343  T
Q  518 tcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||  |   || |||||||||||||||||||||||||    
T  33118344 tccaatggcgaaatctcactacccaaggtgtttacaa 33118380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 554
Target Start/End: Complemental strand, 8390341 - 8390001
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| || ||||||||||||||||| |  ||||||| || |  ||||||||||||| ||||||||||| | ||| | || ||   |||||||||| ||    
T  8390341 caacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaagca-caaagataagcgatgaaagaaatgaacaaacacaccaaaat 8390243  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    |||| |||||||||| | |||||||||||| ||||| ||| |||| |  ||||||| || ||||||||| | | || || |||   ||||||||||||||    
T  8390242 tgttgacccagttcggtccaaaatgacctaatttgggggagagagca--gctctccaatccactatgatgaaagtgttaaaaaagagttacaagaaatta 8390145  T
Q  412 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagatt 508  Q
     | ||   |||  || ||||||||   |||||||||| ||||| | |  ||||||| | ||||||||  |||||| |||||||||||| | |||||| ||    
T  8390144 gcttacaagcttgcacaagaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaagaggaagctt 8390047  T
Q  509 ttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    ||| ||||||||  |  | | ||||||||| |||||||||||||||    
T  8390046 tttgattcttccaatggtaaaatctcactatccaaggtgtttacaa 8390001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 554
Target Start/End: Original strand, 31055892 - 31056288
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  31055892 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 31055990  T
Q  257 acataatcaaagcaacaaagataagcaag--aagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaa 353  Q
     |||||||||||||| ||||||||||||   |||  |||||   ||||||||||  |||||| ||| |||||| | ||| |||||||| | | | ||| |    
T  31055991 gcataatcaaagcaataaagataagcaatgaaagaaaaggaacaaacacaccaaagattgttgacctagttcggttcaatatgacctaatctaggggaga 31056090  T
Q  354 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccat 452  Q
    ||| |  ||||||| || ||||| ||| | | || ||||||   ||||||| |||||| | |||  ||| ||||| ||||||   |||||||||| ||||    
T  31056091 gagca--gctctccaatccactaagatgaaagtgttacaaaagagttacaataaattagcttataagcttacaaaagaacaagacctaatttctacccat 31056188  T
Q  453 tatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac 552  Q
    | | |  ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||| |  |  ||| |||||||||||||||||||||||    
T  31056189 tttgt--gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttac 31056286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 572
Target Start/End: Original strand, 34388771 - 34389113
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||||||||||||||| |  ||||||| || |  || |||||||||| ||||||||| ||| ||| | |||||   |||||||| | |||||| ||    
T  34388771 aaacagacctagatctaagtgtagagcaacaccacaagcaaaatcaaagca-caaagataaacaaagaaagaaaggaacaaacacaccgagattgttgac 34388869  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    ||| |||| | ||| |||||||| | ||| ||| ||||  ||||||||| || ||||||||| | | || ||||||   |||||||||||||| | ||      
T  34388870 ccaattcggtccaatatgacctaatctgggggagagag--tagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagctta-- 34388965  T
Q  419 cgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattc 516  Q
        ||||| ||||||   |||||||||| ||||| | |  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| || |    
T  34388966 ----cacaa-gaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatcc 34389058  T
Q  517 ttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  34389059 ttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 34389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 554
Target Start/End: Complemental strand, 2838124 - 2837881
Alignment:
Q  310 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaat 409  Q
    |||||| |||||||||| | ||| |||||||||| ||| ||| |||| | |  ||||| || |||||  || | | ||||||||||  ||||||||||||    
T  2838124 attgttgacccagttcggtccaatatgacctactctgggggagagagcaca--tctccaatccactaaaatgaaagtgatacaaatgagttacaagaaat 2838027  T
Q  410 taacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattt 509  Q
    ||  | |   |||||||||||||| |  ||||||| |  ||||| || | ||||||| |  || |||||||||| |||||||||||||||||||| ||||    
T  2838026 tagtacaagagctcacaaagaacacaacctaatttttgcccatttttcatgtcacccaccttctcaatgaatcctaagagaaaacactaaaggaatattt 2837927  T
Q  510 tttattcttcctctaatgaga-tctcactacccaaggtgtttacaa 554  Q
    ||||| |||||  |  ||| | |||||||| |||||||||||||||    
T  2837926 tttatccttccaatggtgaaattctcactatccaaggtgtttacaa 2837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 213 - 554
Target Start/End: Original strand, 39482836 - 39483178
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| ||||||||||| |||||||| |  | ||||| || |  ||||| |||||||| |||||||| ||| ||| |  ||||   |||||||||| ||    
T  39482836 caacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcataaccaaagcaataaagataaacaatgaaagagaggaacaaacacaccaagat 39482935  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    |||| ||| |||||| | ||| |||||||| | ||| ||| |||| |  |  |||| || ||||||||| | |||| ||||||   ||||||||||||||    
T  39482936 tgttgacctagttcggtccaatatgacctaatatgggggagagagca--ggcctccaatccactatgatgaaaatgttacaaaagagttacaagaaatta 39483033  T
Q  412 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat---gaatccaaagagaaaacactaaaggaagat 507  Q
     | |||  ||| ||| ||||||||   |||||||||| |||||  ||| ||||||| ||||| ||||   |||||| |||||||||||| |||||||| |    
T  39483034 gcttataagcttacacaagaacaagacctaatttctacccatt--ttatgtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaagtt 39483131  T
Q  508 tttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||| ||  ||||  |  ||| |||||||||||||||||||||||||    
T  39483132 ttttgatcattccaatggtgaaatctcactacccaaggtgtttacaa 39483178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 572
Target Start/End: Original strand, 21630111 - 21630207
Alignment:
Q  475 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  21630111 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 21630207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 423 - 572
Target Start/End: Complemental strand, 41586532 - 41586385
Alignment:
Q  423 cacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctc 522  Q
    ||||||||||||| | ||||||||| | ||| || ||||||| |  ||||| |||| |||| ||||||||||| ||||| ||  ||||| ||||| |  |    
T  41586532 cacaaagaacaaactttaatttctacctatttttcaagtcactc--actcagaatggatcctaagagaaaacattaaagaaaactttttgattctcctcc 41586435  T
Q  523 taatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    || | | ||||||||||||||||||||||||| || || ||||| |||||    
T  41586434 tagtaaaatctcactacccaaggtgtttacaactgttttccaacccaaga 41586385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 572
Target Start/End: Original strand, 17865371 - 17865467
Alignment:
Q  475 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  17865371 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttctatttgtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 17865467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 554
Target Start/End: Original strand, 8039923 - 8040309
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 269  Q
    ||||||||| |||||||||  ||||||| |||| |||||||||||||     ||||||||| |||||||| |  ||||||| || |  ||||||||||||    
T  8039923 aaaggaagtggtaatcaatagataaagt-gtcttcaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagc 8040021  T
Q  270 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 368  Q
    || |||||||||||| |||||  |||| | || ||| ||| |||||| |||||||||  | ||| |||||||| | ||| ||  |||||  ||||||||     
T  8040022 aataaagataagcaatgaaggagaggaaaaaatacatcaagattgttgacccagttcagtccaatatgacctaatctggggg--agagagcagctctcca 8040119  T
Q  369 attcactatgataagaatgatacaaa--tatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacc 465  Q
    || ||||||||| | | || ||||||     |||||||||||||| | ||   ||| ||| ||||||||   |||||||||| ||||  |||  ||||||    
T  8040120 atccactatgatgaaagtgttacaaaagagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccat--tttgtgtcacc 8040217  T
Q  466 cgcactcaca--atgaatccaaagag-aaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    | | ||||||  |||||||| ||||| ||||||  |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  8040218 cactctcacaatatgaatcctaagagaaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 8040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 341
Target Start/End: Original strand, 20522070 - 20522254
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| |||||||||| ||||||| ||||| |||||| |||||     | |||| ||||||||||| |  ||||||| || |     
T  20522070 agatgtgtggagaaaaggaagtggtaatcaatggataaagt-gtctccaagcaaaaacaacaaaaaaagacatagatctaagtgtagagcaacaccacaa 20522168  T
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 341  Q
     |||||||||||||| ||||||||| || ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  20522169 gcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 20522254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 499
Target Start/End: Complemental strand, 1345635 - 1345448
Alignment:
Q  310 attgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcact-atgataagaatgatacaaatatgttacaagaaa 408  Q
    |||||| |||||||||| | ||| |||||||||| ||| ||| |||| |   ||||||||| |||| | ||| | | ||||||||||  ||| |||||||    
T  1345635 attgttgacccagttcggtccaatatgacctactctgggggagagagcac--ctctccgatccacttaagatgaaagtgatacaaatgagttgcaagaaa 1345538  T
Q  409 ttaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaa 499  Q
    ||| || ||  ||||||||| |||| |  |||||||||| ||||| || | ||||||| ||||| |||||||||  || ||||||||||||    
T  1345537 ttagcacatgagctcacaaa-aacacaacctaatttctacccatttttcatgtcacccccactctcaatgaatcataaaagaaaacactaa 1345448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 572
Target Start/End: Complemental strand, 11049522 - 11049487
Alignment:
Q  537 tacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11049522 tacccaaggtgtttacaaatgtttcccaacacaaga 11049487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 511
Target Start/End: Original strand, 27139853 - 27140004
Alignment:
Q  360 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 459  Q
    |||||||| ||||||||||| || | ||||||||| |||||||| ||||||||  |    |||||||||| |||||  ||||||||||  |||  || ||    
T  27139853 agctctccaattcactatgaaaatagtgatacaaaaatgttacaggaaattaaatttaaagctcacaaagtacaaaccctaatttctacacatatttcaa 27139952  T
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 511  Q
    |||||  | || || ||||||||| || |||||||| ||||| ||| |||||    
T  27139953 gtcacttgaacccaaaatgaatcctaatagaaaacaataaagaaagcttttt 27140004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 493
Target Start/End: Original strand, 35397639 - 35397694
Alignment:
Q  438 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaa 493  Q
    |||||||||||||||| || ||||||||| || || |||||||||| |||||||||    
T  35397639 ctaatttctatccatttttcaagtcacccacaatctcaatgaatcctaagagaaaa 35397694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 554
Target Start/End: Complemental strand, 10707182 - 10707104
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| |||| ||||||||||||||||||||    
T  10707182 atgaatcctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctaactacccaaggtgtttacaa 10707104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 493
Target Start/End: Complemental strand, 27149245 - 27149207
Alignment:
Q  455 tttaagtcacccgcactcacaatgaatccaaagagaaaa 493  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  27149245 tttaagtcacccacactcacaatgaatcctaagagaaaa 27149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 572
Target Start/End: Complemental strand, 23078400 - 23078306
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||| || ||||||| |||| |||||||| ||||  || |||||  | |||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  23078400 atgaaccctaagagaagacacaaaaggaagcttttg-atccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 258 - 583
Target Start/End: Complemental strand, 34670810 - 34670488
Alignment:
Q  258 cataatcaaagcaacaaagataagcaagaaggg--aaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
    |||| ||||||||||||||||||| || || ||  ||| | ||||||| |  |||||||||| |||||||| | |||||||||||||| || |||| | |    
T  34670810 catattcaaagcaacaaagataagaaataaagggaaagaaaacaacacgcatacattgtttatccagttcggtccaaaatgacctactatgaaggagata 34670711  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 455  Q
    | |  |||||| ||| ||||||||||||   | |||||| | |||||||||||||| | || | |||||||||||||||||  ||||||||||||||| |    
T  34670710 gca--gctctctgatccactatgataag---ggtacaaagaggttacaagaaattagcttaatagctcacaaagaacaaatcataatttctatccatttt 34670616  T
Q  456 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaa 555  Q
    | ||||||| | |||||||||||||||| ||||||||||||||||| ||  ||||  || ||||||||||||||||||||||||||||| || |||||||    
T  34670615 tcaagtcactcacactcacaatgaatcctaagagaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaagatgcttacaaa 34670516  T
Q  556 tggttcccaacacaagaaaaaactctca 583  Q
    || ||| |||| ||||||||||||||||    
T  34670515 tgtttctcaactcaagaaaaaactctca 34670488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 124 - 572
Target Start/End: Original strand, 37781673 - 37782126
Alignment:
Q  124 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaaca--- 220  Q
    |||||||||||||||| |||||| |||  |||| |||||||| |||| ||  ||| |||||||| || ||||| |||||||   |||| ||||||||       
T  37781673 tgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatgagtaaagtatcatcaatcaacaacatca 37781772  T
Q  221 ---aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgttta 317  Q
       || |||||||||||||||| |||||||||| || |  |||| ||||||||||||||||||| || ||  |||| | |||||| ||||| ||||||||    
T  37781773 acaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaataatagaagaaaacaacaaaccaatattgttta 37781872  T
Q  318 cccagttcgatgcaaa-atgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacata 416  Q
    ||||||||| |  ||| ||||||||||| ||||   ||||| || |||||| || |||||| |||| | ||||||||| | |||||||||||||| | ||    
T  37781873 cccagttcggtttaaatatgacctacttcggag---agagagtaactctccaatccactataataaaagtgatacaaagaggttacaagaaattagctta 37781969  T
Q  417 ttcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactc-acaatgaatccaaagagaaaacactaaaggaagattttttatt 515  Q
        ||||||||||||||||  ||||||||| ||||| || ||||||||  |||||   ||||||||  |||||||||||||||| ||   ||||| |||    
T  37781970 aaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagactttttgatt 37782069  T
Q  516 cttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    |||||  |||||| |||||||||||||||||||||||||||| || ||||| |||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaaatgttttccaacccaaga 37782126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 124 - 616
Target Start/End: Complemental strand, 873809 - 873307
Alignment:
Q  124 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaag----------- 212  Q
    ||||||||||| |||| |||||| | ||||||| ||||||||||| |||| ||| |||||| |||||||||||  ||||  |||| |||               
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaagaggtcttaagaaacaaaaaca 873710  T
Q  213 -caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacat 311  Q
     ||||||||||| ||| || |||||||| |||| ||||| || | ||||| ||||| |||| |||||||| || |||  ||||| |||||||||||| ||    
T  873709 acaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaagataaggaaacaacacaccaatat 873610  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    | ||||| ||||||| |   |||| || ||| || ||   ||||||  | ||||||||| ||||||||| |||||||||| |||| ||||||||||||||    
T  873609 tatttactcagttcggttttaaattacatacattaga---aagagagcaactctccgatccactatgattagaatgataccaataggttacaagaaatta 873513  T
Q  412 acatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 511  Q
    || ||   |||| |||| ||||||| ||||||||||  |||  ||  |||||||| || ||||| | | ||  |||||||||||| ||| |||| |||||    
T  873512 acttaaaagctcgcaaataacaaatcctaatttctactcatatttcgagtcacccacagtcacattaagtcttaagagaaaacacaaaatgaagcttttt 873413  T
Q  512 tattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaaaaactctcatcaaagatgcccaaccctaaa-ttccct 610  Q
     || || ||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||||| | ||| ||||||  | |||||||||| ||||||    
T  873412 gatcctccctctaatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaaaaattatcaccaaagacactcaaccctaaagttccct 873313  T
Q  611 cctttg 616  Q
     |||||    
T  873312 tctttg 873307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 217 - 551
Target Start/End: Complemental strand, 42599762 - 42599429
Alignment:
Q  217 aacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtt 315  Q
    |||||||| |||||||||||| | |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| ||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgtt 42599663  T
Q  316 tacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacat 415  Q
     ||||| |||  | ||| ||||| || | ||| ||| |||||  | | |||| || ||||| ||| | |||| |||||  | |||||||||||||| | |    
T  42599662 gacccaattcagtccaatatgacataatatgggggagagagagcaaccctccaatccactaagatgaaaatgttacaatga-gttacaagaaattagctt 42599564  T
Q  416 attcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttat 514  Q
    ||  ||| ||||| ||||||   |||||||||| ||||| | |  ||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||    
T  42599563 ataagcttacaaaagaacaagacctaatttctacccattttgt--gtcacccgcactctcaatgaatcctaagagaaaacacaaaaggaagtttttttat 42599466  T
Q  515 tcttcctctaatgagatctcactacccaaggtgttta 551  Q
     |||||  |  ||| ||||||||||||||||||||||    
T  42599465 ccttccaatggtgaaatctcactacccaaggtgttta 42599429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 176 - 572
Target Start/End: Original strand, 10047242 - 10047643
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 269  Q
    ||||||||| |||||||||| ||||||| ||||| |||||| |||||     | |||| ||||||||||| |  ||||||| || |  ||||||||||||    
T  10047242 aaaggaagtggtaatcaatggataaagt-gtctccaagcaataacaacaaaaatagacatagatctaagtgtagagcaacaccacaagcataatcaaagc 10047340  T
Q  270 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 368  Q
    || |||||||| ||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||| |  || ||||     
T  10047341 aataaagataaacaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagca--gccctcca 10047438  T
Q  369 attcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccg 467  Q
    || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| ||||||||   |||||||||| ||||| | |  |||||||     
T  10047439 atccactatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcaccca 10047536  T
Q  468 cactcacaat---gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttccca 564  Q
    ||||| ||||   |||||| |||| ||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| ||||||    
T  10047537 cactctcaataatgaatcctaagacaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttccca 10047635  T
Q  565 acacaaga 572  Q
    || |||||    
T  10047636 acccaaga 10047643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 572
Target Start/End: Original strand, 5112366 - 5112499
Alignment:
Q  438 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 537  Q
    ||||||| || | ||| |||||||||| | |||||||||||||||| |||||||||||  |||||||| ||||| || |||||  |  ||| ||||||||    
T  5112366 ctaatttgtacctattttttaagtcactcacactcacaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcact 5112465  T
Q  538 acccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||||||||| |||| |||||||| |||||    
T  5112466 acccaaggtgtttac-aatgtttcccaacccaaga 5112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 370 - 557
Target Start/End: Original strand, 39593789 - 39593974
Alignment:
Q  370 ttcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgca 469  Q
    ||||||||||||||| ||||||||||| ||||||||||||||   ||    |||||||||||  ||  |||||||||| || ||  | ||||||| |  |    
T  39593789 ttcactatgataagagtgatacaaataagttacaagaaattagtttacaaactcacaaagaatcaac-ctaatttctacccctttgtcaagtcactcaaa 39593887  T
Q  470 ctcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 557  Q
    | |||||||||||| |||||||| |||| ||||||| |||||  |  |||||||||||||||||||| |  |||||||||||||||||    
T  39593888 cccacaatgaatcctaagagaaaccactcaaggaagctttttggtcattcctctaatgagatctcac-attcaaggtgtttacaaatg 39593974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 4956015 - 4956157
Alignment:
Q  141 aataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaac---aacaaacagacctagatctaa 237  Q
    |||||| ||||||||| ||||||||  ||| ||  |||||||||| ||||||||||  || | || ||||||||||   ||||||| || |||||| |||    
T  4956015 aataatcataccaatataacttagacatgtggagcaaaggaagtaataatcaatgagcaatgcagcctcaagcaacaacaacaaacggatctagatttaa 4956114  T
Q  238 gtatgaagcaacatcagacacataatcaaagcaacaaagataa 280  Q
    || |||||||||| || | ||||||||||||||||| ||||||    
T  4956115 gtgtgaagcaacaccacaaacataatcaaagcaacacagataa 4956157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 520
Target Start/End: Complemental strand, 1983546 - 1983187
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa------acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  |||||||||| ||||||||| ||||||| |  ||||||||||||||      || ||| || |||||||| | ||||| || || |     
T  1983546 agatgtgtggagcaaaggaagtaataatcaatggataaagtgggttcaagcaacaacaacaacaaactgacttaaatctaagtgtaaagcatcaccacaa 1983447  T
Q  257 acataatcaaagcaacaaagataagcaagaagggaaggagacaa-cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
    ||||||||||| ||||||  ||||| ||| | | ||| | |||| |||||||| || ||  |||||||||| | ||| |||||||||| ||| ||| | |    
T  1983446 acataatcaaaacaacaat-ataagaaagcaagaaagaaaacaaacacaccaatatggta-acccagttcggtccaatatgacctactatgggggagata 1983349  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 455  Q
    | |  ||||||| || ||||| ||| | | |||||||||   |||||||||||||| | |    ||||||||||||||||   |||||||||||| || |    
T  1983348 gca--gctctccaatccactaggatcaaagtgatacaaaggggttacaagaaattagcttgcaagctcacaaagaacaaaacataatttctatcc-tttt 1983252  T
Q  456 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcc 520  Q
    | ||||||||  ||||| |||||||||| |||||||||| | |||||||| |||||||| |||||    
T  1983251 tcaagtcacctacactctcaatgaatcctaagagaaaacccaaaaggaagcttttttatccttcc 1983187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 297 - 465
Target Start/End: Complemental strand, 8114843 - 8114679
Alignment:
Q  297 acaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaata 396  Q
    |||||||||||| |||||||||| | |||| |  | ||||| ||||| | |||   |||||| | |||||| || ||||||||||||||||||| |||||    
T  8114843 acaacacaccaatattgtttacctaattcggtctataatgatctactatcgag---agagaacaactctccaatccactatgataagaatgatataaata 8114747  T
Q  397 tgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacc 465  Q
     ||||||||||| | || |||   |||||||||||||||  ||||||| |||||||| || ||||||||    
T  8114746 ggttacaagaaa-tcacttataatctcacaaagaacaaaccctaatttgtatccatttttcaagtcacc 8114679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 493
Target Start/End: Complemental strand, 18912411 - 18912276
Alignment:
Q  358 atagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattattt 457  Q
    |||||||||| || ||||||||||||| ||||||||| | | ||||||||||||   ||    |||||||||||||||  |||| || |||||||| ||     
T  18912411 atagctctccaatccactatgataagagtgatacaaaaaggatacaagaaattagtttacaaactcacaaagaacaaaccctaaattatatccatttttc 18912312  T
Q  458 aagtcacccgcactcacaatgaatccaaagagaaaa 493  Q
    ||||||| |  || |||||||||||| |||||||||    
T  18912311 aagtcactcaaacccacaatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 572
Target Start/End: Complemental strand, 39774325 - 39774140
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaag-aacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatcca 484  Q
    ||||||||||| |||||||||||||| | ||   |||||||||| |||||   |||||||||| ||| | || | ||||| | ||||| ||||||||||     
T  39774325 tgatacaaataggttacaagaaattagcttaaaagctcacaaagaaacaagacctaatttcta-ccaattttcatgtcactcacactctcaatgaatccc 39774227  T
Q  485 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||| || |||||||| ||||| ||  ||||  |  ||| | ||||||||||||||||||||| |||| |||||||| |||||    
T  39774226 aagagaaaatacaaaaggaagctttttgatcattccaatggtgaaaactcactacccaaggtgtttac-aatgtttcccaactcaaga 39774140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 175 - 572
Target Start/End: Original strand, 3777412 - 3777811
Alignment:
Q  175 taaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaag 268  Q
    |||||||||| ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  | ||| | || |  |||||||||||    
T  3777412 taaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtgtagaacaaaaccacaagcataatcaaag 3777510  T
Q  269 caacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctcc 367  Q
    || ||||||||||||| ||| | |||||   |||||||| | |||||| |||||||||| | ||| || ||||| | | ||||| ||||  |||||||||    
T  3777511 ca-caaagataagcaatgaaagaaaggaacaaacacaccgagattgttgacccagttcggtccaatataacctaatctagaggagagag--tagctctcc 3777607  T
Q  368 gattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcaccc 466  Q
     || ||||||||| | | || |||||| | ||||||||||| || | |     || ||| ||||||||  ||||||||||| ||||| | |  |||||||    
T  3777608 aatccactatgatgaaagtgttacaaaga-gttacaagaaaatagcttgcaaacttacacaagaacaagatctaatttctacccattttgt--gtcaccc 3777704  T
Q  467 gcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttccca 564  Q
     | ||||||||  |||||| ||||||||| || |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| ||||||    
T  3777705 actctcacaatatgaatcctaagagaaaatacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttccca 3777803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 24333978 - 24334056
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  24333978 atgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 572
Target Start/End: Complemental strand, 5269131 - 5269035
Alignment:
Q  475 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||| ||||||||||||| |||| |||||||| |||||    
T  5269131 aatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttac-aatgtttcccaacccaaga 5269035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 572
Target Start/End: Complemental strand, 25861980 - 25861868
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaa-cactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatgg 558  Q
    ||||||| ||||| |||||||||| ||||||||| ||| |||||||| ||||| || |||||  |  ||| |||||||||| |||||||||||| ||||     
T  25861980 gtcacccacactctcaatgaatcctaagagaaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactactcaaggtgtttac-aatgt 25861882  T
Q  559 ttcccaacacaaga 572  Q
    |||||||| |||||    
T  25861881 ttcccaacccaaga 25861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 341
Target Start/End: Complemental strand, 25862269 - 25862085
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  25862269 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 25862171  T
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 341  Q
     |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| || ||||||| | ||| ||||||||    
T  25862170 gcataatcaaagcaataaagataagcaatgaaagaaaggaataaacacaccaagattgttgactcagttcggtccaatatgaccta 25862085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 39245899 - 39246028
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| ||    
T  39245899 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaggcataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacaccaagat 39245998  T
Q  312 tgtttacccagttcgatgcaaaatgaccta 341  Q
    |||| |||||||||| | ||| ||||||||    
T  39245999 tgttgacccagttcggtccaatatgaccta 39246028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 380
Target Start/End: Original strand, 24333717 - 24333880
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| |||||||||||||||||||| |  |||||||  ||   |||||||||||||| |||||||||||| ||| | ||| |   |||||||||| ||    
T  24333717 caacaaaaaacagacctagatctaagtgtagagcaacacaag---cataatcaaagcaataaagataagcaatgaaagaaagaaacaaacacaccaagat 24333813  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgat 380  Q
    |||| || ||||||| | ||| |||||||| ||||| ||  |||||  |||||||| || |||||||||    
T  24333814 tgttaactcagttcggtccaatatgacctaatttggggg--agagagcagctctccaatccactatgat 24333880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 38152623 - 38152517
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| |||||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  38152623 aaacagacctagatctaagtgtatagcaacaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 38152525  T
Q  319 ccagttcg 326  Q
    ||||||||    
T  38152524 ccagttcg 38152517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 554
Target Start/End: Complemental strand, 3794010 - 3793932
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||| ||||| |||||| |||||||| ||||| || ||| || |  ||| |||||||||||||||||||||||||    
T  3794010 atgaatcctaagagcaaacacaaaaggaagctttttgatcctttctatggtgaaatctcactacccaaggtgtttacaa 3793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 54867096 - 54867218
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||| ||||||||||| |  ||||||| || |  ||||||||||| || |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  54867096 aaacagacatagatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 54867195  T
Q  319 ccagttcgatgcaaaatgaccta 341  Q
    |||||||| | ||| ||||||||    
T  54867196 ccagttcggtccaatatgaccta 54867218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 475 - 572
Target Start/End: Complemental strand, 6743345 - 6743250
Alignment:
Q  475 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||| |||||||||||||||| |||| |||||||| |||||    
T  6743345 aatgaatcctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcattacccaaggtgtttac-aatgtttcccaacccaaga 6743250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 550
Target Start/End: Complemental strand, 42685011 - 42684974
Alignment:
Q  513 attcttcctctaatgagatctcactacccaaggtgttt 550  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42685011 attcttcctctaatgagatctcactatccaaggtgttt 42684974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 524
Target Start/End: Original strand, 36175236 - 36175321
Alignment:
Q  437 tctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctcta 524  Q
    ||||||||||| ||||| | |||||||| |  ||||||||||||||| | ||||||||| ||||||||| | ||| || |||||||||    
T  36175236 tctaatttctacccattttctaagtcacac--actcacaatgaatcctatgagaaaacattaaaggaagttgtttgatccttcctcta 36175321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 347
Target Start/End: Original strand, 5147590 - 5147717
Alignment:
Q  221 aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacc 319  Q
    |||||||||| |||||||| |  ||||||| || | ||||||||||| ||| | |||||||||| ||| | |||||   |||||||| | |||||| |||    
T  5147590 aacagacctaaatctaagtgtagagcaacaccacaaacataatcaaaacaatagagataagcaatgaaagaaaggaacaaacacaccgagattgttgacc 5147689  T
Q  320 cagttcgatgcaaaatgacctactttgg 347  Q
    ||||||| | ||| |||||||| |||||    
T  5147690 cagttcggtccaatatgacctaatttgg 5147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 411
Target Start/End: Complemental strand, 16630865 - 16630675
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa--gaagggaaggagacaacacaccaacattgttta 317  Q
    ||||| |||||||||||||| | |||||||| || |  ||||||||||| |||||||||||||||   |||  |||||   ||||||||||  ||||| |    
T  16630865 aaacaaacctagatctaagtgtaaagcaacaccacaagcataatcaaag-aacaaagataagcaatgaaagaaaaggaacaaacacaccaaggttgttga 16630767  T
Q  318 cccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    || |||||| | ||| ||||| || | ||||||  |||||| |||||||| || ||||||||| | | || ||||||   ||||||||||||||    
T  16630766 cctagttcggtccaatatgacataatctggagg--agagaacagctctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 16630675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 42234574 - 42234512
Alignment:
Q  180 gaagtagtaatcaatgaataaagtagtctcaagcaacaacaaacagacctagatctaagtatgaag 245  Q
    ||||||||||||||  | ||||||||| |||||||||||| |||| |||||||||||||| |||||    
T  42234574 gaagtagtaatcaa--attaaagtagtttcaagcaacaac-aacatacctagatctaagtgtgaag 42234512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 4956232 - 4956281
Alignment:
Q  362 ctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    |||||| || ||||||||||||||||||| ||| | ||||||||||||||    
T  4956232 ctctccaatccactatgataagaatgataaaaagaggttacaagaaatta 4956281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 554
Target Start/End: Original strand, 18377489 - 18377604
Alignment:
Q  438 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 537  Q
    |||||||||| ||||| || | ||||||| |||| ||||||||||| |||| ||||||| ||| |||| ||||| || |||||  |  | | |||||| |    
T  18377489 ctaatttctacccatt-ttcatgtcacccacacttacaatgaatcctaagaaaaaacacaaaatgaagctttttgatccttccaatggtaaaatctcatt 18377587  T
Q  538 acccaaggtgtttacaa 554  Q
    |||||||| ||||||||    
T  18377588 acccaaggggtttacaa 18377604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 124 - 411
Target Start/End: Complemental strand, 16265 - 15983
Alignment:
Q  124 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaac 223  Q
    |||||||||||  |||||||||| | ||||||| ||||||||||||| ||  ||||||||||||||||||||     |||||| |||||||||||||||     
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatg-----agtagtttcaagcaacaacaaat 16171  T
Q  224 agacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagat-aagcaagaagggaag-gagacaacacaccaacattgtttaccca 321  Q
      |||||||||||||| |||| ||||| || | ||||| |||||||||||||||| |||  |||| |||||  | |||||||||||| ||| ||||||||    
T  16170 ttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataaagagagaaaggaagaaaaacaacacaccaatattatttaccca 16071  T
Q  322 gttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    ||||| | |||||| | ||||| |||||  ||||||| | | |||  || ||||||||||||| | ||||||| ||||||||||||||||    
T  16070 gttcggtccaaaataatctactatggag--aagagaacaacactctaatccactatgataagagttatacaaagatgttacaagaaatta 15983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 151 - 566
Target Start/End: Original strand, 98998 - 99412
Alignment:
Q  151 ccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaaa-cagacctagatctaagtatgaagcaac 249  Q
    |||||| |||||| | |||| || ||||||||||||||||||||||  |||||||||| ||||||||||||| || || || ||| |||| | ||| |||    
T  98998 ccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtcttaagcaacaacaaaacaaacatatatccaagtgtaaagaaac 99097  T
Q  250 atcagacacataatcaaagcaacaaagataagcaagaagggaaggaga-caacacaccaacattgtttacccagttcgatgcaaaatgacctactttgga 348  Q
    | |  | ||||| ||||||||||||||| ||  |||| | |||||||| ||||| || || ||||||||| | ||||  ||||||||||| |||| |  |    
T  99098 accgcaaacatactcaaagcaacaaagacaataaagaggagaaggagaacaacaaacaaatattgtttacacggttcagtgcaaaatgacatactctcaa 99197  T
Q  349 ggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctat 448  Q
    |  |||| | || || || ||| || |||||| |||||||||| | || |||||||||||||| | ||   ||||||| |||||||| | |||||||||     
T  99198 g--aagatagtaactttctgatccattatgatgagaatgatacgattaagttacaagaaattagcttagaagctcacagagaacaaactttaatttctac 99295  T
Q  449 ccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgt 548  Q
    ||||| ||||||| || | |||||||||||||||| | ||||||| || |||||||| ||||| ||  || |||||||||||| | |||||| |||||||    
T  99296 ccatt-tttaagttactcacactcacaatgaatcctatgagaaaataccaaaggaagctttttaatcatttctctaatgagatataactacctaaggtgt 99394  T
Q  549 ttacaaatggttcccaac 566  Q
    ||||| ||| || |||||    
T  99395 ttacagatgttttccaac 99412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 163 - 566
Target Start/End: Complemental strand, 33721804 - 33721399
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaaca---acaaacagacctagatctaagtatgaagcaacatcagacaca 259  Q
    |||||||| ||  |||||||||||||||| |||| ||||||||| ||||||||||   |||||||  ||||||||||||| |||| || || || | |||    
T  33721804 agatgtgtggaacaaaggaagtagtaatcgatgagtaaagtagtttcaagcaacaacaacaaacatccctagatctaagtgtgaaacatcaccacaaaca 33721705  T
Q  260 taatcaaagcaacaaagataagcaagaagggaag-gagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaa 358  Q
    || |||||||||||||||||||  |||| |||||  | |||||||||||| |||  ||| ||||||   | |||||||| ||||| ||  || |||||||    
T  33721704 tattcaaagcaacaaagataagagagaaaggaagaaaaacaacacaccaatattacttatccagtttagtccaaaatgatctactatg--gggaagagaa 33721607  T
Q  359 tagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattattta 458  Q
     | ||||| ||| ||||||||||||||| ||||||| | ||||||||||||||   ||    |||| ||||||||||  |||||||    ||||| ||||    
T  33721606 caactctctgatccactatgataagaattatacaaagaggttacaagaaattagtttaaaaactcataaagaacaaaacctaattttcccccatttttta 33721507  T
Q  459 agtcacccgcact-cacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 557  Q
     ||||| | |||| |  ||||||||| |||||||||||||||||| || ||||| ||  ||||  |||||| ||||||||| | ||||||||||||||||    
T  33721506 ggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatcattccaataatgaaatctcacta-caaaggtgtttacaaatg 33721408  T
Q  558 gttcccaac 566  Q
     ||||||||    
T  33721407 tttcccaac 33721399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 150 - 577
Target Start/End: Complemental strand, 1115361 - 1114931
Alignment:
Q  150 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa---acagacctagatctaagtatgaagc 246  Q
    ||||||| ||||||||| | | || |||| |||||||||||||||||  |||||||  ||||||||||||||   | |||| |||||||  || |||||     
T  1115361 accaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagtagcttcaagcaacaacaacaaatagacatagatctctgtgtgaagt 1115262  T
Q  247 aacatcagacacataatcaaagcaacaaagataagcaagaagggaa-ggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctacttt 345  Q
    |||| || |  | || | ||| ||||||||||| |  ||| | ||| ||| |||||||||||| |||||||||| | |||| | || |||||  |||| |    
T  1115261 aacaccacagtcttatttaaaccaacaaagatatgacagatgagaaaggaaacaacacaccaatattgtttacctaattcggtccataatgatttactat 1115162  T
Q  346 ggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttc 445  Q
       |   |||||  || ||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||   ||||| ||| ||||||  ||||||||    
T  1115161 ctgg---agagagcagatctccaatccactatgataagaatgatacaaataggttacaagaaatcaacttaaaagctcaaaaataacaaaccctaatttc 1115065  T
Q  446 tatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaa--gattttttattcttcctctaatgagatctcactacccaa 543  Q
    |||||||| || ||||||||| ||||||||||||||   |||||||||||| |||||||    |||||| | ||||| ||||||||||||||| | |||     
T  1115064 tatccatttttcaagtcacccacactcacaatgaatattaagagaaaacacaaaaggaaacttttttttctccttcccctaatgagatctcaccatccat 1114965  T
Q  544 ggtgtttacaaatggttcccaacacaagaaaaaa 577  Q
    | |||| ||||||| ||||||||  |||||||||    
T  1114964 gttgttaacaaatgtttcccaaccaaagaaaaaa 1114931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 163 - 554
Target Start/End: Original strand, 31979363 - 31979757
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| |||| |||||||||||||     ||||||||| |||||||| |  |||||||||| |     
T  31979363 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtcttcaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacatcacaa 31979461  T
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
     |||||||||||||| |||||||||||| |||    ||||   |||||||||| |||||| |||||||||| | ||| ||||| || | ||| ||| |||    
T  31979462 gcataatcaaagcaataaagataagcaatgaaatagaggaacaaacacaccaagattgttgacccagttcggtccaatatgacataatctgggggagaga 31979561  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccatta 454  Q
    | |  || |||| || ||||| ||| | | || | ||||   |||||||||||||||| |||  ||| ||||| ||||||   |||||||||| |||||     
T  31979562 gca--gccctccaatccactaagatgaaagtgttgcaaaagagttacaagaaattaacttataagcttacaaaagaacaagacctaatttctacccatt- 31979658  T
Q  455 tttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||  ||||||| ||||| |||||||||| |||||||||||| ||||||||  |||| || |||||  |  ||| |||||||||||||||||||||||||    
T  31979659 tttgtgtcacccacactctcaatgaatcctaagagaaaacacaaaaggaag-cttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 31979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 258 - 572
Target Start/End: Complemental strand, 24436117 - 24435806
Alignment:
Q  258 cataatcaaagcaacaaagataagcaagaagggaaggagacaa-cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 356  Q
    ||||| |||||||||||||||||| ||| | | ||| | |||| |||||||| || ||  |||||||||||| ||| |||||||||| | | ||| ||||    
T  24436117 cataaacaaagcaacaaagataagaaagcaagaaagaaaacaaacacaccaagatggta-acccagttcgatccaatatgacctactctaggggagagag 24436019  T
Q  357 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaa-caaattctaatttctatccattat 455  Q
     |  || ||||||| ||||| ||| | |||| |||||||   ||||||||||||| | |||  ||| ||||| || |||   |||||||||| ||||| |    
T  24436018 ca--gccctccgatccactaggatgaaaatgttacaaatgaattacaagaaattagcttataagcttacaaaaaaacaagacctaatttctacccatt-t 24435922  T
Q  456 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaa 555  Q
    |||  |||||| || ||| ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| ||    
T  24435921 ttatatcacccacattcataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aa 24435823  T
Q  556 tggttcccaacacaaga 572  Q
    || |||||||| |||||    
T  24435822 tgtttcccaactcaaga 24435806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 547
Target Start/End: Complemental strand, 10077412 - 10077027
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  10077412 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 10077314  T
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
     |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||||| |||| | ||| |||||||| | ||| ||  |||    
T  10077313 gcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccaattcggtccaatatgacctaatctggggg--aga 10077216  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcac-aaagaacaaattctaatttctatccatta 454  Q
    ||  ||| |||| || ||||||||| | | || |||||| | |||||||||||||| | |||  ||| || |||||||||   |||||||||| ||||      
T  10077215 gagcagccctccaatccactatgatgaaagtgttacaaaaaagttacaagaaattagcttataagcttacaaaagaacaagacctaatttctacccat-- 10077118  T
Q  455 tttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtg 547  Q
    |||  ||||||| ||||  |||||||||| |||| ||||||| |||||||| ||||| || |||||  |  | | ||||||||||||||||||    
T  10077117 tttgtgtcacccacact--caatgaatcctaagataaaacacaaaaggaagctttttgatccttccaatggtcaaatctcactacccaaggtg 10077027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 420 - 554
Target Start/End: Original strand, 14521784 - 14521919
Alignment:
Q  420 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttc 519  Q
    |||||||||||||| |  ||||||||||  |||| || | ||||||| ||||| |||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  14521784 gctcacaaagaacacaacctaatttctacacatttttcatgtcacccacactctcaataaatcctaagagaaaacattaaaggaagattttttatccttc 14521883  T
Q  520 ctctaatgaga-tctcactacccaaggtgtttacaa 554  Q
    |  |  ||| | ||||||||||||||||||||||||    
T  14521884 caatggtgaaattctcactacccaaggtgtttacaa 14521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 554
Target Start/End: Original strand, 31936695 - 31936820
Alignment:
Q  427 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 526  Q
    |||||||||| |||||||||| ||||| || |  |||||| ||||| |||||||||| ||||||||||||  || |||| ||||| || |||||  |  |    
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac--aaagaagctttttgatccttccaatggt 31936792  T
Q  527 gagatctcactacccaaggtgtttacaa 554  Q
    || |||||||||||||||||||||||||    
T  31936793 gaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 572
Target Start/End: Complemental strand, 5572188 - 5572078
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 559  Q
    ||||||| ||||| |||||||||| |||||||||||| ||||||||  |||| ||  ||||  || ||| ||||||||||||||||||||||| |||| |    
T  5572188 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaag-cttttgatcattccaatagtgaaatctcactacccaaggtgtttac-aatgtt 5572091  T
Q  560 tcccaacacaaga 572  Q
    ||||||| |||||    
T  5572090 tcccaacccaaga 5572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 537
Target Start/End: Complemental strand, 30518172 - 30517998
Alignment:
Q  362 ctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagt 461  Q
    ||||| ||| ||||||||||||| ||||||||| | |||||| |||| |||| ||   | ||||||||||||||   ||||||||| | ||| || ||||    
T  30518172 ctctctgatccactatgataagagtgatacaaagaggttacatgaaactaacttaaaagttcacaaagaacaaaccttaatttctacctatttttcaagt 30518073  T
Q  462 cacccgcactcac-aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 537  Q
     |||| ||||||| ||||||| |  |||||||||||||||||||| ||||| || |||||  |||||| ||||||||    
T  30518072 tacccacactcacaaatgaat-cttagagaaaacactaaaggaag-tttttgatccttccaataatgaaatctcact 30517998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 22963605 - 22963732
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacat 311  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | |||||||| | ||| | |||||   |||||||||| ||    
T  22963605 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacacaccaagat 22963704  T
Q  312 tgtttacccagttcgatgcaaaatgacc 339  Q
    |||| |||||||||| ||||| ||||||    
T  22963705 tgttgacccagttcggtgcaatatgacc 22963732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 339
Target Start/End: Complemental strand, 23824788 - 23824661
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacat 311  Q
    |||||| |||||||||||||||||||| |  ||||||| || |  |||||||||||||| | |||||||| | ||| | |||||   |||||||||| ||    
T  23824788 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagcaatagagataagctatgaaagaaaggaacaaacacaccaagat 23824689  T
Q  312 tgtttacccagttcgatgcaaaatgacc 339  Q
    |||| |||||||||| ||||| ||||||    
T  23824688 tgttgacccagttcggtgcaatatgacc 23824661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 5017653 - 5017547
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| |||||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  5017653 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 5017555  T
Q  319 ccagttcg 326  Q
    ||||||||    
T  5017554 ccagttcg 5017547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 554
Target Start/End: Complemental strand, 21801275 - 21801196
Alignment:
Q  475 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  21801275 aatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 31077203 - 31077146
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaaca 220  Q
    |||||||||||  ||||||| ||||||||||||| |||||||| ||||||||| ||||    
T  31077203 agatgtgtagagaaaaggaaatagtaatcaatgagtaaagtagcctcaagcaataaca 31077146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 554
Target Start/End: Original strand, 18232708 - 18233091
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 269  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||| |||||||||||||| |  ||||||| || |  ||||||||||||    
T  18232708 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacaaacctagatctaagtgtagagcaacaccacaagcataatcaaagc 18232806  T
Q  270 aacaaagataagc-aagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 368  Q
    || |||||||||| | ||| |  ||||   |||||||||| |||||| || ||  ||| | ||| |||||||| | ||| ||  |||||  | | ||||     
T  18232807 aataaagataagcgatgaaagagaggaacaaacacaccaagattgttgactcaaatcggtccaatatgacctaatctggggg--agagagcaaccctcca 18232904  T
Q  369 attcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccg 467  Q
    |||||||||||| | | || ||||||   |||||||||||| | | |||  ||| ||| ||||||||   |||||||||| ||||  |||  |||||||     
T  18232905 attcactatgatgaaagtgttacaaaagagttacaagaaatcagcttataagcttacacaagaacaagacctaatttctacccat--tttgtgtcaccca 18233002  T
Q  468 cactc---acaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||   | ||||||||| |||||||||||| ||||||||  |||| || |||||  |  ||| |||||||||||||||||||||||||    
T  18233003 cactctcaataatgaatcctaagagaaaacacaaaaggaag-cttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 4629865 - 4629929
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 284  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||||||    
T  4629865 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaa 4629929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 27165539 - 27165611
Alignment:
Q  150 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaa-gtagtctcaagcaacaacaa 221  Q
    ||||||| |||  |||||||| ||  ||||||||| |||||||||||  ||| ||||||||||||||||||||    
T  27165539 accaatataacaaagatgtgtggagcaaaggaagtcgtaatcaatgagcaaaagtagtctcaagcaacaacaa 27165611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 30519213 - 30519145
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 281  Q
    |||||||||||| |  ||||| ||||| |||||||||| || | ||||| | |||||||||||||||||    
T  30519213 caacaacaaacatatttagatttaagtgtgaagcaacaccataaacatatttaaagcaacaaagataag 30519145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 300 - 566
Target Start/End: Complemental strand, 102598 - 102334
Alignment:
Q  300 acacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgt 399  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||| | |||| ||  ||||| | ||||| ||| ||| ||||||||| ||||||||| | ||    
T  102598 acacaccaatattatttacccagttcgattcaaaattacctagtgtggaaga--gagaacaactctctgatccacaatgataagagtgatacaaagaggt 102501  T
Q  400 tacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaa 499  Q
    |||||||||||| | ||   ||||||||| ||||||  |||||||||| ||||| || ||||||| | |||||| ||| ||| | |||||||||||||||    
T  102500 tacaagaaattatcttaaaagctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcataataaattcgaagagaaaacactaa 102401  T
Q  500 aggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaac 566  Q
    |||| | ||||| || ||||||||||| | |||| |||  ||||||||||| |||||| || |||||    
T  102400 aggatgctttttgatccttcctctaataaaatcttacttaccaaggtgttttcaaatgttttccaac 102334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 263 - 590
Target Start/End: Complemental strand, 31513466 - 31513148
Alignment:
Q  263 tcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaa-tgacctactttggaggaaagagaatag 361  Q
    ||||||||||||||||||   |||| ||||| | |||||||||||| |||||||||| | ||| || ||||| ||||||| |||  ||||  || |||||    
T  31513466 tcaaagcaacaaagataaaagagaaaggaagaaaacaacacaccaatattgtttacctaattccatccaaaaatgacctatttt--agga--gataatag 31513371  T
Q  362 ctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagt 461  Q
     |||| ||| ||||||||||||||| ||  ||| | ||||||| |||||| | |||||    ||||||||||||  |||||||||| | ||| ||  |||    
T  31513370 ttctctgatccactatgataagaattatgaaaagaggttacaaaaaattagcttattc----acaaagaacaaac-ctaatttctacctatt-ttcgagt 31513277  T
Q  462 cacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttc 561  Q
    || || |||||||||||||||| ||||||||||||||||| |   |||||||| ||||||||||||| |||||||||  ||||||||||||||||| |||    
T  31513276 catccacactcacaatgaatcctaagagaaaacactaaag-atttttttttatccttcctctaatgaaatctcactattcaaggtgtttacaaatgtttc 31513178  T
Q  562 ccaacacaagaaa-aaactctcatcaaaga 590  Q
     |||| ||||||| ||||||||||| ||||    
T  31513177 tcaacccaagaaataaactctcatcgaaga 31513148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 386 - 554
Target Start/End: Complemental strand, 7493193 - 7493025
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 485  Q
    ||||||||| | |||| ||||||||||||||   ||||||| ||||||||  |||||||||| |  || || ||||||||| ||||| |||| ||||| |    
T  7493193 tgatacaaagaagttataagaaattaacataaaagctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactctcaataaatccta 7493094  T
Q  486 agagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    ||| |||||||||||||||| ||||| || ||||   |  ||| |||||||||||||||||||||||||    
T  7493093 agaaaaaacactaaaggaagctttttgatccttctaattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 427 - 554
Target Start/End: Complemental strand, 19752372 - 19752246
Alignment:
Q  427 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 526  Q
    |||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  | ||    
T  19752372 aagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatgat 19752274  T
Q  527 gagatctcactacccaaggtgtttacaa 554  Q
    || |||||||||||||||||||||||||    
T  19752273 gaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 386 - 572
Target Start/End: Original strand, 3051197 - 3051382
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 485  Q
    ||||||||||  |||||||||||||| ||||   ||||||||||||||||   ||||||||| ||||| || | |||||   ||||| |||||||||| |    
T  3051197 tgatacaaatgagttacaagaaattagcataagagctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactctcaatgaatccta 3051296  T
Q  486 agagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||| ||| |||||||| ||||| ||  ||||  |  ||| ||||||||||||||| ||||||| |||| |||||||| |||||    
T  3051297 agagaaagcacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaaga 3051382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 299 - 495
Target Start/End: Complemental strand, 9054942 - 9054748
Alignment:
Q  299 aacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatg 398  Q
    |||||||||| ||| ||||| | ||||  | ||| |||||||||| ||||||| |||| |  ||||||  || ||||| ||| | | |||||||||   |    
T  9054942 aacacaccaatattatttactctgttcagtccaatatgacctactctggaggagagagca--gctctctaatccactaagatgaaagtgatacaaagtgg 9054845  T
Q  399 ttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaaca 495  Q
    ||||||||||||| | ||   || ||||||||||||| ||||||||||| ||||| || ||||||| | ||||| |||||||||| |||||||||||    
T  9054844 ttacaagaaattagcttaaaagcgcacaaagaacaaaatctaatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 554
Target Start/End: Complemental strand, 5702730 - 5702332
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctca-agcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||| ||||| |||||||||||||||||| |||||  |||||||||||     |||||||||||||||||| |  |||| || || |     
T  5702730 agatgtgtggagcaaatgaagtggtaatcaatgaataaagt-gtctcctagcaacaacaacaaaaacagacctagatctaagtgtagagcatcaccacaa 5702632  T
Q  257 acataatcaaagcaacaaagataagc-aagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
     |||||| ||||||| | |||||||| | ||||| |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| |||    
T  5702631 gcataattaaagcaatagagataagctatgaaggaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatatgggggagaga 5702532  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatta 454  Q
    | ||  | |||| || | ||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| |||| ||||  |||||||||| ||||      
T  5702531 gcat--ccctccaatcccctatgatgaaagtgttacaaaagagttacaagaaattagcttataagcttacacaagagcaaaacctaatttctacccat-- 5702436  T
Q  455 tttaagtcacccgcactc---acaatgaatccaaagag-aaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
    ||| |||||||| |||||   | ||||||||| ||||| ||||||| |||||||| ||||| ||  ||||  |  ||| |||||||||||||||||||||    
T  5702435 tttgagtcacccacactctcaataatgaatcctaagagaaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgttt 5702336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 550
Target Start/End: Complemental strand, 33503740 - 33503697
Alignment:
Q  507 ttttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33503740 ttttttattcttcctctaatgagatctcactacccaaggtgttt 33503697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 572
Target Start/End: Complemental strand, 4696781 - 4696443
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||| || |||||||| |  ||||||| || | ||||||||||||||| |||||||||||| ||| | || ||   |||||||||| |||||| ||    
T  4696781 aaacagacataaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataagcaatgaaagaaatgaacaaacacaccaagattgttgac 4696682  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||||| ||| |||||||| | ||| ||| |||| |  || |||| || |||||||||  ||| ||         |||||||||||||| | |||     
T  4696681 ccagttcgatccaatatgacctaatctgggggagagagca--gccctccaatccactatgat--gaaaga---------gttacaagaaattagcttata 4696595  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 517  Q
     ||| ||  ||||||||   |||||||||| ||||| | |  ||||||| ||||| || ||||||| |||||||||||| |||||||| ||||| ||  |    
T  4696594 agcttacgcaagaacaagacctaatttctacccattttgt--gtcacccacactctcattgaatcctaagagaaaacacaaaaggaagctttttgatctt 4696497  T
Q  518 tcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    |||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  4696496 tccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 4696443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 510
Target Start/End: Complemental strand, 8863732 - 8863521
Alignment:
Q  297 acaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataa-gaatgatacaaat 395  Q
    |||||||| ||| ||||||| ||||||||| | |||||| ||||||| ||  ||||| ||  || ||||  ||| |||||||| || || |||||||||     
T  8863732 acaacacatcaatattgttttcccagttcggttcaaaataacctactctgatggaaatag--taactctttgatccactatgagaaagagtgatacaaag 8863635  T
Q  396 atgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaa-tgaatccaaagagaaaac 494  Q
    | |||||||||||||||| ||   |||||||  |||||||   ||||||||| ||||| || ||||||| | ||| || || |||||| |||||||||||    
T  8863634 aggttacaagaaattaacttaaaagctcaca--gaacaaaccttaatttctacccatttttcaagtcactcacacacataaatgaatctaaagagaaaac 8863537  T
Q  495 actaaaggaagatttt 510  Q
    | ||||||||||||||    
T  8863536 attaaaggaagatttt 8863521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 554
Target Start/End: Complemental strand, 23799725 - 23799428
Alignment:
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
    ||||||||||||||| | |||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| ||||||||  |||    
T  23799725 acataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatttggagg--aga 23799628  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatta 454  Q
    ||  ||| |||| || ||||||||| | | || ||||||   |||||||||||||| | ||   ||| ||| ||||||||   |||||||||| ||||      
T  23799627 gagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaagacctaatttctacccat-- 23799530  T
Q  455 tttaagtcacccgcactcaca--atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac 552  Q
    |||  ||||||| |  |||||  |||||||| ||| |||||||| |||||||| ||||| || |||||  |  ||| ||||| |||| ||||||||||||    
T  23799529 tttgtgtcacccactgtcacaatatgaatcctaagggaaaacacaaaaggaagctttttgatccttccaatggtgaaatctccctactcaaggtgtttac 23799430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 511
Target Start/End: Complemental strand, 5990581 - 5990456
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 485  Q
    ||||||||| |||||||||||||||| | ||   ||||||||||||||    || ||||  | ||||| || ||||||||| ||||  |||||||||| |    
T  5990581 tgatacaaagatgttacaagaaattagcttaaaagctcacaaagaacacgacctcattttcacccatttttcaagtcacccacactttcaatgaatccta 5990482  T
Q  486 agagaaaacactaaaggaagattttt 511  Q
    |||||||||||||||| ||| |||||    
T  5990481 agagaaaacactaaagaaagcttttt 5990456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 554
Target Start/End: Original strand, 28307711 - 28307807
Alignment:
Q  458 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    ||||||||| ||||| || ||||||| || ||||||||| |||| ||| |||||||| |||||  |  ||| |||||||||||||||||||| ||||    
T  28307711 aagtcacccacactctcactgaatcctaaaagaaaacacaaaagaaagcttttttatccttccaattgtgaaatctcactacccaaggtgttaacaa 28307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 11771855 - 11771921
Alignment:
Q  214 aacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataa 280  Q
    ||||||||||| ||||||||||||||||||||||||| || |  |||||  ||| ||||||||||||    
T  11771855 aacaacaaacatacctagatctaagtatgaagcaacaccaaaagcataacaaaaacaacaaagataa 11771921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 554
Target Start/End: Complemental strand, 26403159 - 26403081
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||  |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  26403159 atgaatcataagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 5990793 - 5990748
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 221  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||    
T  5990793 aaaggaagtagtaatcaatggataaagtagcatcaagcaacaacaa 5990748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 9055082 - 9055025
Alignment:
Q  164 gatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 221  Q
    ||||||| || ||||||||||| ||||||||| |||||||||||||||  ||||||||    
T  9055082 gatgtgtggagtaaaggaagtactaatcaatggataaagtagtctcaaaaaacaacaa 9055025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 7493328 - 7493264
Alignment:
Q  150 accaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca 214  Q
    ||||||| ||||  ||||||| ||  ||||||||||||||||||||  |||||||||||||||||    
T  7493328 accaataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaagca 7493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 551
Target Start/End: Original strand, 14601233 - 14601405
Alignment:
Q  379 ataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatg 478  Q
    |||| ||||||||||| | |||||| ||||||| | |||  || ||||||||||  || ||||||| || | ||| || ||||||| |  || ||| |||    
T  14601233 ataataatgatacaaagaggttacacgaaattagcgtataagcccacaaagaacgtatcctaatttttacctatttttcaagtcactcaaacgcacgatg 14601332  T
Q  479 aatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 551  Q
    ||||| | ||||||||| ||||| ||| ||||  ||| || ||||||| |||||||| || |||| |||||||    
T  14601333 aatcctatgagaaaacaataaagaaagcttttagattatttctctaataagatctcattagccaatgtgttta 14601405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 8863920 - 8863833
Alignment:
Q  127 tgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagca 214  Q
    ||||||||| ||| |||||| | ||||||| |||||| ||||||  |  |||||||||  |||| ||||||||||||||| |||||||    
T  8863920 tgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtgaaacaaaggaagtgctaattaatgaataaagtagtttcaagca 8863833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 32916304 - 32916355
Alignment:
Q  199 aaagtagtctcaagcaacaacaaacagacctagatctaagtatgaagcaaca 250  Q
    |||||||||||||||||||||||| | || ||||| |||||||||| |||||    
T  32916304 aaagtagtctcaagcaacaacaaataaacttagatataagtatgaaccaaca 32916355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 380
Target Start/End: Complemental strand, 26403415 - 26403256
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| |||    ||||   |||||||||| |||||| ||    
T  26403415 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaaacgaggaacaaacacaccaagattgttgac 26403316  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgat 380  Q
    |||||||| | ||| |||||||| | ||| ||  |||||  |||||||| || |||||||||    
T  26403315 ccagttcggtccaatatgacctaatctggggg--agagagcagctctccaatccactatgat 26403256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 28387895 - 28387955
Alignment:
Q  221 aacagacctagatctaagtatgaagcaacatcagaca--cataatcaaagcaacaaagataa 280  Q
    ||||||||||||||||||| |||||||| |||| |||  |||||| ||||||||||||||||    
T  28387895 aacagacctagatctaagtgtgaagcaaaatca-acaagcataatgaaagcaacaaagataa 28387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 34477417 - 34477335
Alignment:
Q  206 tctcaagcaacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaag 288  Q
    ||||||||||||||||| ||| |||||| ||||  |||| |||||  | | ||||| ||||||||| ||||||||| ||||||    
T  34477417 tctcaagcaacaacaaagagatctagatttaagggtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaag 34477335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 28307421 - 28307469
Alignment:
Q  173 attaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 221  Q
    |||||||||||||||||||||||| | |||||| |||||| ||| ||||    
T  28307421 attaaaggaagtagtaatcaatgagtcaagtagcctcaagtaacgacaa 28307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 500
Target Start/End: Complemental strand, 34477239 - 34477128
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 485  Q
    ||||||||| | |||| ||||||||||| ||    ||||||||||||||   |||||||| | ||||| || ||||||| |  |  ||||||||||||||    
T  34477239 tgatacaaagaggttaaaagaaattaacttacaaactcacaaagaacaa---ctaatttcgacccatttttcaagtcactcaaatccacaatgaatccaa 34477143  T
Q  486 agagaaaacactaaa 500  Q
    |||||||||| ||||    
T  34477142 agagaaaacaataaa 34477128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 180 - 565
Target Start/End: Original strand, 5611009 - 5611398
Alignment:
Q  180 gaagtagtaatcaatgaataaagtagtctcaagcaacaa------caaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 273  Q
    ||||||||||||||||| ||||||||||| |||||||||      |||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  5611009 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 5611108  T
Q  274 aagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattca 373  Q
    |||||||| ||||||||||| | |||||||||||| |||||||| | | ||||   |||||| || |||| ||||||||   ||  | || || ||| ||    
T  5611109 aagataagaaagaagggaagaaaacaacacaccaatattgtttatcaaattcggcccaaaataacatactatggaggaa--tgaccaactttctgatcca 5611206  T
Q  374 ctatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca 473  Q
    ||||||||| | ||||||||| |  ||| || |||||| | ||   | |||||||||||||| ||| ||||||||||||| |||||||||    ||||||    
T  5611207 ctatgataaaactgatacaaagagattaaaaaaaattagcttaaaagttcacaaagaacaaaatcttatttctatccatt-tttaagtcataaacactca 5611305  T
Q  474 -caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaa 565  Q
      ||||| ||| ||||||||||||||||| ||| ||||| ||  || |  |||||| |||||| || | ||||||||||| |||| |||||||    
T  5611306 taaatgattcctaagagaaaacactaaagcaagctttttgatcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 5611398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 360 - 557
Target Start/End: Original strand, 30899918 - 30900114
Alignment:
Q  360 agctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaa 459  Q
    |||||||||||  | ||||| |||| ||||||||| | |||||||||||||| | ||   |||||||||||||||| |||| ||||||   ||| || ||    
T  30899918 agctctccgatctattatgagaagagtgatacaaagaggttacaagaaattagcctacaagctcacaaagaacaaactctattttctactgatttttcaa 30900017  T
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatg 557  Q
    | ||| |  || ||||| |||||| | ||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  30900018 gccactcaaacccacaaagaatccta-gagaaaacactaaagaaagcttttttatccttcctctaatgaaatctcactacccaaggtgtttataaatg 30900114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 426 - 572
Target Start/End: Original strand, 28832374 - 28832519
Alignment:
Q  426 aaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 525  Q
    ||||||||| |||||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||  |      
T  28832374 aaagaacaagttctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatgg 28832473  T
Q  526 tgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  28832474 tgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 28832519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 423 - 511
Target Start/End: Original strand, 2630345 - 2630433
Alignment:
Q  423 cacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 511  Q
    |||||||||||||  ||||||| ||| |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  2630345 cacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactcacaatgaatcctaagagaaaacactaaaggaagcttttt 2630433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 572
Target Start/End: Complemental strand, 11181852 - 11181667
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatcca 484  Q
    ||||||||||  |||||||||||||| | ||   |||| |||| ||||||   |||||||||| ||||| || | ||||||| ||||||||||||||||     
T  11181852 tgatacaaatgagttacaagaaattagcctaaaagctctcaaatgaacaagacctaatttctacccatt-ttcatgtcacccacactcacaatgaatcct 11181754  T
Q  485 aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    |||||||||||| |||||||| ||||| || |||||  |  ||| || |||||||||||||||||||| |||| |||||||| |||||    
T  11181753 aagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttcactacccaaggtgtttac-aatgtttcccaacccaaga 11181667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 163 - 550
Target Start/End: Complemental strand, 42127656 - 42127266
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 257  Q
    |||||||| ||  |||| |||| |||||||||| ||||||| ||||| ||||||||||||    |||||| || |||||| | |  ||||||| || |      
T  42127656 agatgtgtggagcaaagaaagtggtaatcaatggataaagt-gtctccaagcaacaacaacaaaacagacttaaatctaattgtagagcaacaccacaag 42127558  T
Q  258 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 356  Q
    |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| |||||| ||||||||||||  || |||||||| | ||| ||| ||||    
T  42127557 cataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcgatctaatatgacctaatctgggggagagag 42127458  T
Q  357 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattat 455  Q
     |  || | || || ||||| ||| | | || |||||  | |||||||||||||| | |||  ||| ||||| |||||| | ||| |||||| ||||| |    
T  42127457 ca--gccccccaatccactaagatgaaagtgttacaatga-gttacaagaaattagcttataagcttacaaaagaacaagtcctactttctacccatttt 42127361  T
Q  456 ttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
    | |  |||||| ||||| |||||||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||    
T  42127360 tcatatcacccacactctcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 158 - 550
Target Start/End: Original strand, 34842449 - 34842843
Alignment:
Q  158 aacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa------acagacctagatctaagtatgaagcaacat 251  Q
    ||||||||||||| || ||||||||||||||||||| || |||||||| |||||||| ||||||      ||| |||||||||||||| ||||||||||     
T  34842449 aacttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaataaacaaacctagatctaagtgtgaagcaacac 34842547  T
Q  252 cagacacataatcaaagcaacaaagataagcaagaagggaaggagacaacacaccaacatt-gtttacccagttcgatgcaaaatgacctactttggagg 350  Q
    || |  ||||  | |||||||||||||||| |||| ||||  || ||||  |||| | ||| |||||||||||| |    ||  |  ||||| || ||||    
T  34842548 cacaagcatatccgaagcaacaaagataagaaagatggga--gaaacaatccaccgaaatttgtttacccagtttggataaatttatcctacatttgagg 34842645  T
Q  351 aaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatcc 450  Q
     | ||||  |||||||  || |||||||  | || ||||||||| | |||||||||  ||| | ||   |||||| ||||||| || ||||||||||  |    
T  34842646 ga-gagagcagctctctaatccactatgtaatgagtgatacaaagaggttacaagatgttatcttacaagctcaccaagaacatatcctaatttctactc 34842744  T
Q  451 attatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
    ||| || |||||||    || |||||||||| | ||||||| ||||||||| || | ||| ||  ||||| |||||||||||||||||||||||||||||    
T  34842745 atttttcaagtcactaaaacccacaatgaattctaagagaacacactaaagaaa-actttgtaaccttcccctaatgagatctcactacccaaggtgttt 34842843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 554
Target Start/End: Complemental strand, 17004193 - 17003811
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagacacataatcaaagc 269  Q
    ||||||||| |||||||||  ||||||| ||||| ||||||||||||     ||||||||| |||||||| | |||||||| || |  ||||||||||||    
T  17004193 aaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgt-aagcaacaccacaagcataatcaaagc 17004096  T
Q  270 aacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccg 368  Q
    || |||||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||  |||||  |||||| |     
T  17004095 aaaaaagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatctggggg--agagagcagctcttca 17003998  T
Q  369 attcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatt--atttaagtcacc 465  Q
    || ||||||||| | | |  | ||||   ||||||| |||||||| ||   ||| ||| ||||||||   |||||||||| |||||  |||| | ||||     
T  17003997 atccactatgatgaaagtatttcaaaagagttacaaaaaattaacttacaagcttacacaagaacaagacctaatttctacccatttaatttcactcact 17003898  T
Q  466 cgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    | ||  ||  |||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  17003897 ctca--caatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 427 - 554
Target Start/End: Complemental strand, 31300574 - 31300447
Alignment:
Q  427 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 526  Q
    |||||||| | |||||||||| |||||  | |  |||||| ||||| |||||||||| |||||||||||| ||||||||  |||| || |||||  |  |    
T  31300574 aagaacaagtcctaatttctacccatttctcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatggt 31300475  T
Q  527 gagatctcactacccaaggtgtttacaa 554  Q
    || |||||||||||||||||||||||||    
T  31300474 gaaatctcactacccaaggtgtttacaa 31300447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 3880166 - 3880307
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtct-caagcaacaacaaa--cagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 272  Q
    ||||||||| |||||||||  ||||||| |||| ||| ||||||||||  |||||||| |||||||| | |||||||| || |  ||||||||||||||     
T  3880166 aaaggaagtggtaatcaatagataaagt-gtcttcaatcaacaacaaaaacagacctaaatctaagtgtaaagcaacaccacaagcataatcaaagcaat 3880264  T
Q  273 aaagataagcaa-gaagggaaggagacaacacaccaacattgtt 315  Q
    |||||||||||| ||| | ||||| |||||||||||| ||||||    
T  3880265 aaagataagcaatgaaagaaagga-acaacacaccaagattgtt 3880307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 19588896 - 19589007
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 559  Q
    ||||||| || || |||||||||| |||||||||||| |||||||||||||| || |||||  |  ||| |||||||| |||||| ||||||| |||| |    
T  19588896 gtcacccacaatctcaatgaatcctaagagaaaacacaaaaggaagatttttgatccttccaatggtgaaatctcactgcccaagatgtttac-aatgtt 19588994  T
Q  560 tcccaacacaaga 572  Q
    ||||||| |||||    
T  19588995 tcccaacccaaga 19589007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 572
Target Start/End: Complemental strand, 24553495 - 24553362
Alignment:
Q  438 ctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcact 537  Q
    |||||||||| ||||| ||||  | |||| |||||  ||||||| | |||||||||||| |||||||| ||||| || ||||   |  ||| ||||||||    
T  24553495 ctaatttctacccattttttatatgacccacactcttaatgaattctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctcact 24553396  T
Q  538 acccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||||||||| |||| |||||||| |||||    
T  24553395 acccaaggtgtttac-aatgtttcccaacccaaga 24553362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 2630087 - 2630132
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 221  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  2630087 aaaggaagtagtaagcaatgaataaagtagcctcaagcaacaacaa 2630132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 554
Target Start/End: Original strand, 10281901 - 10281997
Alignment:
Q  460 gtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    ||||||| ||||||||||  |||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  10281901 gtcacccacactcacaatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 6741964 - 6742039
Alignment:
Q  421 ctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 496  Q
    |||||||||||||||  ||||||||||  |||| || ||||||||| ||||| |||||||||| |||| |||||||    
T  6741964 ctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactctcaatgaatcctaagaaaaaacac 6742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 28537489 - 28537527
Alignment:
Q  183 gtagtaatcaatgaataaagtagtctcaagcaacaacaa 221  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaa 28537527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 30899668 - 30899765
Alignment:
Q  124 tgttgtgaattcaaactaataata-ataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa 221  Q
    |||||||||||||||| ||||| | ||| ||||| ||||||||||||| ||   || ||| |||||||||||||  ||||||| |||||||||||||||    
T  30899668 tgttgtgaattcaaac-aataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaa 30899765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 492
Target Start/End: Complemental strand, 33030948 - 33030854
Alignment:
Q  398 gttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaa 492  Q
    |||||||||||||| | ||   ||||||||||||||||   ||||||||| ||||| || ||||||| | ||||| |||||||||| ||||||||    
T  33030948 gttacaagaaattagcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 572
Target Start/End: Complemental strand, 11916901 - 11916807
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||| || |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  11916901 atgaaccctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 11916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 24553691 - 24553569
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| |     
T  24553691 aaacagacctaaatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgat 24553592  T
Q  319 ccagttcgatgcaaaatgaccta 341  Q
    |||||||| | ||| ||||||||    
T  24553591 ccagttcggtccaatatgaccta 24553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 12084361 - 12084298
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 284  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  12084361 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaa 12084298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 180 - 565
Target Start/End: Original strand, 21156296 - 21156685
Alignment:
Q  180 gaagtagtaatcaatgaataaagtagtctcaagcaacaa------caaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaaca 273  Q
    ||||||||||||||||| ||||||||||| |||||||||      |||||| |||||||||||||  |||| ||||| || |   ||| |||||||||||    
T  21156296 gaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaaca 21156395  T
Q  274 aagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattca 373  Q
    |||||||| ||||||||||| | |||||||||||| |||||||| | | ||||   |||||| || |||| ||||||||   ||  | || || ||| ||    
T  21156396 aagataagaaagaagggaagaaaacaacacaccaatattgtttatcaaattcggcccaaaataacatactatggaggaa--tgaccaactttctgatcca 21156493  T
Q  374 ctatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactca 473  Q
    ||||||||| | ||||||||| |  ||| || |||||| | ||   | |||||||||||||| ||| ||||||||||||| |||||||||    ||||||    
T  21156494 ctatgataaaactgatacaaagagattaaaaaaaattagcttaaaagttcacaaagaacaaaatcttatttctatccatt-tttaagtcataaacactca 21156592  T
Q  474 -caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaa 565  Q
      ||||| ||| ||||||||||||||||| ||| ||||| ||  || |  |||||| |||||| || | ||||||||||| |||| |||||||    
T  21156593 taaatgattcctaagagaaaacactaaagcaagctttttgatcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaa 21156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 220 - 554
Target Start/End: Complemental strand, 18553058 - 18552726
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||| ||| |||||||| |  ||||||| || | ||||||||||||||| |||||||| ||| ||| | |||||   || ||||||| |||||| ||    
T  18553058 aaacagaactaaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataatcaatgaaagaaaggaacaaatacaccaagattgttgac 18552959  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | | || ||||||   |||||||||||||| | |||     
T  18552958 ccagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttata 18552861  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 517  Q
     ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||    
T  18552860 agcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagttttttgatcct 18552763  T
Q  518 tcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||  |  ||| |||||||||||||||||||||||||    
T  18552762 tccaatggtgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 163 - 572
Target Start/End: Complemental strand, 40593020 - 40592606
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| |||||||||| ||||| | ||||| ||||||||||||     ||||||||| |||||||| |  ||||||| || |     
T  40593020 agatgtgtggagcaaaggaagtggtaatcaatggataaaat-gtctccaagcaacaacaacaaaaacagacctaaatctaagtgtagagcaacaccacaa 40592922  T
Q  257 acataatcaaagcaacaaagataagcaag--aagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaag 354  Q
     |||||||||||||| | ||||||||||   |||  |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||  ||| ||    
T  40592921 gcataatcaaagcaatatagataagcaatgaaagaaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgacctaatctgtgggagag 40592822  T
Q  355 agaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatt 453  Q
    ||||  ||||||| ||  |||||||| | | || ||||||   |||||||||||||| | ||   ||| ||| ||||||||| ||||||||||| |||||    
T  40592821 agaa--gctctccaatcgactatgatgaaagtgttacaaaagagttacaagaaattagcttacaagcttacacaagaacaaaatctaatttctacccatt 40592724  T
Q  454 atttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 551  Q
     | |  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||    
T  40592723 ttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgttta 40592626  T
Q  552 caaatggttcccaacacaaga 572  Q
    | |||| |||||||| |||||    
T  40592625 c-aatgtttcccaacccaaga 40592606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 616
Target Start/End: Original strand, 29100033 - 29100472
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa---acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaac 272  Q
    ||||||||||||||||||||| || | |||||||||||||||||||   || ||  ||||||||| | ||||| |||| || | ||||| |||||||||     
T  29100033 aaaggaagtagtaatcaatgagtagaatagtctcaagcaacaacaacaaactgagatagatctaactgtgaagaaacaccacaaacatattcaaagcaag 29100132  T
Q  273 aaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattc 372  Q
    |||||  || |||||         |||||||||||| ||||||||||||||||| | |||||| ||| ||| |  ||| ||||||  ||||||||  | |    
T  29100133 aaagaagagaaagaaa--------acaacacaccaatattgtttacccagttcggtccaaaattacccactat--agggaagagagcagctctccattcc 29100222  T
Q  373 actatgat-aagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcact 471  Q
    |||||||| |||| ||||||||| | |||| ||||||||| | ||    |||||||||||||||  ||||||||||  | || || ||||||||  ||||    
T  29100223 actatgataaagagtgatacaaagaggttataagaaattagcttaaaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacact 29100322  T
Q  472 ca-caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac--aaatggttcccaacac 568  Q
    ||  ||||||||  |||||| || ||||||||||  |||||||| ||||   ||||   ||||||| |||| | ||||| ||  ||||| ||||||||      
T  29100323 cataaatgaatcataagagataatactaaaggaaacttttttatccttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacct 29100422  T
Q  569 aagaaa-aaactctcatcaaagatgcccaaccctaaa-ttccctcctttg 616  Q
    |||||| ||||||||| ||||||  | |||||||||| ||||||||||||    
T  29100423 aagaaataaactctcaccaaagacactcaaccctaaacttccctcctttg 29100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 353 - 543
Target Start/End: Complemental strand, 44658536 - 44658345
Alignment:
Q  353 agagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccat 452  Q
    ||||||||  |||| ||| ||||| ||||||| ||||||||| ||||||||| |||||| |  | |  ||||||||||| | |||||||||||||||  |    
T  44658536 agagaataattctcagatccactaggataagagtgatacaaaaatgttacaataaattagctcactaactcacaaagaagatattctaatttctatctgt 44658437  T
Q  453 tatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttttt-attcttcctctaatgagatctcactacccaa 543  Q
      || ||||||| |  || |||||| ||||| ||||||||| | ||||| |||||||||| || ||| ||||||||||||||||| ||||||    
T  44658436 atttcaagtcactcaaacccacaattaatcccaagagaaaataataaagaaagatttttttatcctttctctaatgagatctcaccacccaa 44658345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 398 - 554
Target Start/End: Complemental strand, 3328355 - 3328198
Alignment:
Q  398 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 496  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||||| ||||| ||||| |||| ||||||||||||    
T  3328355 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccacactctcaatgtatcctaagagaaaacac 3328256  T
Q  497 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
     |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  3328255 aaaaggaagttttttgatccttccaatgctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 439 - 575
Target Start/End: Original strand, 8126761 - 8126895
Alignment:
Q  439 taatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcacta 538  Q
    ||||||||| ||||| |||  ||||||| ||||| |||||||||  |||||||||||| ||| |||| ||||| || |||||  | |||| |||||||||    
T  8126761 taatttctacccatt-tttgtgtcacccacactctcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatgatgaaatctcacta 8126859  T
Q  539 cccaaggtgtttacaaatggttcccaacacaagaaaa 575  Q
    |||||||||||||| |||| |||||||| ||||||||    
T  8126860 cccaaggtgtttac-aatgtttcccaacccaagaaaa 8126895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 480
Target Start/End: Original strand, 25516791 - 25517153
Alignment:
Q  124 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctcaagcaacaacaa-- 221  Q
    |||||||||||  ||||  |||| ||||||||| | |||   ||||| || ||||| |||||||||||||| | ||||||||||||||  ||||||||      
T  25516791 tgttgtgaatttgaactggtaatcataccaataaatctttattgtgttgagtaaagaaagtagtaatcaataagtaaagtagtctcaaataacaacaaca 25516890  T
Q  222 ----acagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaagaagggaaggaga-caacacaccaacattgttt 316  Q
        | |||| |||||| |||| |||| ||||| || | ||||| | |||| ||||| |||||| |||||| || ||| | ||||||||||| | |||||    
T  25516891 aaaaatagacttagatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaaggataagaaagaagagagggaaaacaacacaccaatagtgttt 25516990  T
Q  317 acccagttcgat-gcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacat 415  Q
    ||||||||||||   ||||||| | ||||||   || |||||| | |||||  ||| | | |||||||||||||| |  || |||| ||||||||| | |    
T  25516991 acccagttcgatctaaaaatgatcaactttg--agagagagaacaactctctaatttattgtgataagaatgataaatttaggttataagaaattagctt 25517088  T
Q  416 attcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaa 480  Q
    |   ||||||||||||||||  ||||||||||   ||| || ||||||||| |||||||| ||||    
T  25517089 aaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacactcacagtgaa 25517153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 258 - 554
Target Start/End: Complemental strand, 1736442 - 1736145
Alignment:
Q  258 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 356  Q
    |||||||||||||| ||| |||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| |||||||| | ||| ||| ||||    
T  1736442 cataatcaaagcaataaacataagcaatgaaagaaaggaacaaacacaccaatattgttgacccagttcggtccaatatgacctaatctgggggagagag 1736343  T
Q  357 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccattat 455  Q
     |  || |||| || ||||||||| | | || ||||||   |||||||||||||||| |||  ||| ||| ||||||||   |||||||||| ||||| |    
T  1736342 ca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattaacttataagcttacacaagaacaagacctaatttctacccatttt 1736245  T
Q  456 ttaagtcacccgcactcacaat---gaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttac 552  Q
     |  ||||||  ||||| ||||   |||||| |||||||||||| ||| |||| ||||| || |||||  |  ||| |||||||||||||||||||||||    
T  1736244 gt--gtcaccaacactctcaataatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac 1736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 572
Target Start/End: Complemental strand, 3323689 - 3323515
Alignment:
Q  398 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 496  Q
    |||||||||||||| | |||  ||| ||||| |||||| |  ||||||||| ||||| || |  |||||| ||||| |||||||| | ||||||||||||    
T  3323689 gttacaagaaattagcttataagcttacaaaagaacaagtcataatttctacccattgttcatatcacccacactctcaatgaattctaagagaaaacac 3323590  T
Q  497 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
     |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  3323589 aaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 3323515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 372 - 604
Target Start/End: Complemental strand, 5366348 - 5366113
Alignment:
Q  372 cactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcact 471  Q
    ||||||||| | | ||||||||| | |||||||||||||| | ||    ||||||| ||| ||||  ||||||||| || || ||  |||||||| ||||    
T  5366348 cactatgatgaaagtgatacaaagaggttacaagaaattatcttaaaatctcacaatgaaaaaatcttaatttctacccttttttctagtcacccacact 5366249  T
Q  472 cacaa-tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat-gagatctcactacccaaggtgtttacaaatggttcccaacaca 569  Q
     | || ||||||| ||| ||||||||||||||||  ||||  || |||||  | || || |||| ||||||||||||||||||||||| || ||||| ||    
T  5366248 aataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttccaattattgaaatcttactacccaaggtgtttacaaatgttttccaactca 5366149  T
Q  570 agaaa-aaactctcatcaaagatgcccaaccctaaa 604  Q
    ||||| ||||||||| ||||||  | ||||||||||    
T  5366148 agaaataaactctcaccaaagactctcaaccctaaa 5366113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 554
Target Start/End: Original strand, 48438126 - 48438461
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||| ||| |||||||| ||| ||  | |||||   |||||||||| ||| || ||    
T  48438126 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataaacaatgacagaaaggaacaaacacaccaagattattgac 48438225  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    | |||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | | || ||||||   |||||||||||||| |||||     
T  48438226 ctagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcatata 48438323  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat---gaatccaaagagaaaacactaaaggaagattttttat 514  Q
     ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| ||||   |||||| |||||||||||| |||||||| ||||| ||    
T  48438324 agcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaagctttttgat 48438421  T
Q  515 tcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
      ||||  |  ||| |||||||||||||||||||||||||    
T  48438422 cattccaatggtgaaatctcactacccaaggtgtttacaa 48438461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 553
Target Start/End: Original strand, 25795931 - 25796024
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttaca 553  Q
    ||||||| ||||| |||||||||| |||||||||||  |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||||    
T  25795931 gtcacccacactctcaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttaca 25796024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 572
Target Start/End: Complemental strand, 8370724 - 8370313
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| || |||||||||  ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  8370724 agatgtgtggagtaaaggaagaggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtgtagagcaacaccacaa 8370626  T
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacacc--aacattgtttacccagttcgatgcaaaatgacctactttggaggaaa 353  Q
     |||||||||||| |||||||||||||| ||| | |||||   ||||||||  || |||||| |||||||||| | ||| |||||||| | ||| ||  |    
T  8370625 gcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctggggg--a 8370529  T
Q  354 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccat 452  Q
    ||||  |||||||| || ||||||||| | | || |||||| | |||||||||||||| | ||   ||| ||| ||||||||    ||||||||| ||      
T  8370528 gagagcagctctccaatccactatgatgaaagtgttacaaaga-gttacaagaaattagcttaaaagcttacacaagaacaagacataatttctaccc-- 8370432  T
Q  453 tatttaagtcacccgcactcaca--atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
     ||||  ||||||| | ||||||  |||||||| |||||||||||| ||||||| | |||| || |||||  |  ||| ||||||||||||||| |||||    
T  8370431 -atttgtgtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaa-acttttgatccttccaatggtgaaatctcactacccaagatgttt 8370334  T
Q  551 acaaatggttcccaacacaaga 572  Q
    || |||| |||||||| |||||    
T  8370333 ac-aatgtttcccaacccaaga 8370313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 504
Target Start/End: Original strand, 21353639 - 21353757
Alignment:
Q  386 tgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaa 485  Q
    ||||||||||  |||||||||||||| || |   |||||||||||||| |  |||||||||| ||||| || | | ||| | |||| ||||||||||  |    
T  21353639 tgatacaaatgagttacaagaaattagcacaagagctcacaaagaacacaacctaatttctacccatttttcatgccactcacacttacaatgaatctta 21353738  T
Q  486 agagaaaacactaaaggaa 504  Q
    |||||||||||||||||||    
T  21353739 agagaaaacactaaaggaa 21353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 554
Target Start/End: Complemental strand, 30710028 - 30709630
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| ||||||||||  |||||| ||||| ||||||||||||     |||||||||||||||||| |  ||||||| || |     
T  30710028 agatgtgtggagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaaacagacctagatctaagtttagagcaacaccataa 30709930  T
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacacc--aacattgtttacccagttcgatgcaaaatgacctactttggaggaaa 353  Q
     |||||||||||| |||||||||||||| ||| | |||||   ||||||||  || |||||| |||||||||| | ||| |||||||| | ||| ||  |    
T  30709929 gcataatcaaagc-acaaagataagcaatgaaagaaaggaacaaacacaccaaaagattgttgacccagttcggtccaatatgacctaatctggggg--a 30709833  T
Q  354 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccat 452  Q
    ||||  ||| |||| || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| |||| |||   |||||||||| ||||    
T  30709832 gagagcagccctccaatccactatgatgaaattgttacaaaagagttacaagaaattagcttataagcttacacaagagcaagacctaatttctacccat 30709733  T
Q  453 tatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtt 549  Q
       ||  ||||||| |||||   | ||||||||| |||||||||||| |||||||| | ||| ||  ||||  | |||| |||||||| |||||||||||    
T  30709732 --cttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaaggaagctatttgatcattccaatgatgaaatctcactccccaaggtgtt 30709635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 572
Target Start/End: Complemental strand, 47923824 - 47923728
Alignment:
Q  475 aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||||||| | |||||||||| |||||||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  47923824 aatgaatcctacgagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 47923728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 572
Target Start/End: Complemental strand, 24695101 - 24694990
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggt 559  Q
    ||||||| ||||| |||||||||| || ||||||||| |||||||| ||||| ||  ||||  |  ||| ||||||| ||||||||||||||| |||| |    
T  24695101 gtcacccacactctcaatgaatcctaaaagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcaccacccaaggtgtttac-aatgtt 24695003  T
Q  560 tcccaacacaaga 572  Q
    ||||||| |||||    
T  24695002 tcccaacccaaga 24694990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 47924106 - 47924028
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaaa--cagacctagatctaagt 239  Q
    |||||||| || |||||||||| |||||||||| ||||||| ||||| |||||||||||||  |||||||||||||||||    
T  47924106 agatgtgtggagtaaaggaagtggtaatcaatggataaagt-gtctccaagcaacaacaaaaacagacctagatctaagt 47924028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 572
Target Start/End: Complemental strand, 1417460 - 1417315
Alignment:
Q  426 aaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaa 525  Q
    ||||||||| | |||||||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||| ||  ||||| || ||| |  |      
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactcccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatgg 1417361  T
Q  526 tgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||| ||||||||||| || |||||||| |||| |||||||| |||||    
T  1417360 tgaaatctcactacctaaagtgtttac-aatgtttcccaacccaaga 1417315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 554
Target Start/End: Complemental strand, 3715921 - 3715843
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||| |||||||||||| |||| ||| ||||| || |||||  |  ||| |||||||||||||||||||||||||    
T  3715921 atgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 472
Target Start/End: Complemental strand, 4387065 - 4386851
Alignment:
Q  258 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaac-attgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
    |||||||||| ||| |||||||||||| ||| | |||||   |||||| |||  |||||||||||||||   | ||  |||||||||| ||| ||| |||    
T  4387065 cataatcaaaacaataaagataagcaatgaaagaaaggaacaaacacatcaaagattgtttacccagtttagttcagtatgacctactctgggggagaga 4386966  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattat 455  Q
    | |  ||||||| || || || ||||| | ||||||||||  |||||||||||||| | ||   ||||||||||||||||  ||||||||||  |||| |    
T  4386965 gca--gctctccaatccaataagataaaagtgatacaaatgggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttctactcatttt 4386868  T
Q  456 ttaagtcacccgcactc 472  Q
    | ||||||||| |||||    
T  4386867 tcaagtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 572
Target Start/End: Original strand, 26298900 - 26299250
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| |  ||||   |||||||||| |||||| ||    
T  26298900 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaacgaaagagaggaacaaacacaccaagattgttgac 26298999  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| ||||| || | ||| ||| |||| |  || |||| ||  |||||||| | | || ||||||   |||||||||||||| | |||     
T  26299000 ccagttcggttcaatatgacataatctgggggagagagca--gccctccaatctactatgatgaaagtgttacaaaagagttacaagaaattagcttata 26299097  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaa-ggaagattttttattc 516  Q
      || | | ||||||||   |||||||||| ||||| | |  ||||||| || || |||| ||||| |||||||||||| ||| ||||| ||||| ||      
T  26299098 aacttagacaagaacaagacctaatttctacccattttgt--gtcacccacaatctcaattaatcctaagagaaaacacaaaaaggaagctttttgataa 26299195  T
Q  517 ttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  26299196 ttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 26299250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 34482106 - 34482174
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 281  Q
    |||||||||||||||||||||| |||| ||||| |||| ||   |||||| ||||||||| ||||||||    
T  34482106 caacaacaaacagacctagatcaaagtgtgaagtaacaccacgtacataaccaaagcaaccaagataag 34482174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 520
Target Start/End: Original strand, 40844801 - 40844861
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcc 520  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||    
T  40844801 gtcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttcc 40844861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 547
Target Start/End: Original strand, 10274589 - 10274620
Alignment:
Q  516 cttcctctaatgagatctcactacccaaggtg 547  Q
    ||||||||||||||||||||||||||||||||    
T  10274589 cttcctctaatgagatctcactacccaaggtg 10274620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 47649737 - 47649815
Alignment:
Q  476 atgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||| |||||||||||| |||||||| ||||| || ||||   |  ||| |||| ||||||||||||||||||||    
T  47649737 atgaatcctaagagaaaacacaaaaggaagctttttgatccttcaaatggtgaaatctaactacccaaggtgtttacaa 47649815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 554
Target Start/End: Complemental strand, 25929332 - 25929237
Alignment:
Q  460 gtcacccgcactcacaatgaatccaaagagaaaacac--taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    ||||||| |||||||||||||||| ||||||||||||   ||| |||| ||||| || |||||  |  ||| |||||||||||||| ||||||||||    
T  25929332 gtcacccacactcacaatgaatcctaagagaaaacacaaaaaaagaagctttttgatccttccgatggtgaaatctcactacccaa-gtgtttacaa 25929237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 25929617 - 25929556
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 281  Q
    ||||| ||||| |||||||| |  ||||||| || | |||||||||||||||||||||||||    
T  25929617 aaacaaacctaaatctaagtgtagagcaacaccacaaacataatcaaagcaacaaagataag 25929556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 8126613 - 8126677
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 284  Q
    ||||| ||||| |||||||| |  ||||||| || || |||||||||||||| ||||||||||||    
T  8126613 aaacatacctaaatctaagtgtagagcaacaccacactcataatcaaagcaataaagataagcaa 8126677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 21711173 - 21711257
Alignment:
Q  258 cataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 341  Q
    |||||||||||||| | |||||||||| ||| | |||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  21711173 cataatcaaagcaatagagataagcaatgaaagaaaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 21711257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 27026857 - 27026920
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa 284  Q
    |||||||||||||||||||| |  ||||||| || |  |||||||||||| ||||||||||||||    
T  27026857 aaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataagcaa 27026920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 176 - 590
Target Start/End: Original strand, 14548 - 14964
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctcaagcaaca-----acaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagca 270  Q
    |||||||||  |||||||| |  |||||||||||||||||||     ||||||| ||||| |||||||||||||| |||| |  |  |||  |||||| |    
T  14548 aaaggaagtgttaatcaattagcaaagtagtctcaagcaacacaacaacaaacatacctatatctaagtatgaagaaacacctcaagcatgttcaaagaa 14647  T
Q  271 acaaagataagcaagaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgat 370  Q
    ||||||||||  |||||| ||| || | |||||||||| |||||||||| | || | | ||||||||| |||| |||  || |||||  | | |||||||    
T  14648 acaaagataaa-aagaagagaaagaaaaaacacaccaatattgtttacctaatttggtccaaaatgacatactatgg--gagagagagcaac-ctccgat 14743  T
Q  371 tcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcac 470  Q
      | |||||||||| ||||||||| | ||||| |||||||| | ||   ||||||||||||| ||  ||| || ||| | ||| || ||||||||| |||    
T  14744 caattatgataagagtgatacaaagaggttacgagaaattagcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacac 14843  T
Q  471 tcacaa--tgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacac 568  Q
    ||||||  ||||||| |||||||||||||||||||   ||||| || |||||  |||| | ||||||| ||| ||||| |||||||||| |||||||| |    
T  14844 tcacaaagtgaatcctaagagaaaacactaaagga--gtttttgatgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaaccc 14941  T
Q  569 aagaaa-aaactctcatcaaaga 590  Q
    || ||| ||||||||| ||||||    
T  14942 aaaaaataaactctcaccaaaga 14964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 220 - 572
Target Start/End: Original strand, 20284001 - 20284351
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| ||||||||| || ||| | |||||   |||||||||| |||||| ||    
T  20284001 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaatgaaagaaaggaacaaacacaccaagattgttgac 20284100  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| |||||||| | ||| ||| |||| |  || |||| || ||||| ||| | | || ||||| |  |||||||||||||| | |||     
T  20284101 ccagttcggtccaatatgacctaatctgggggagagagca--gccctccaatccactaagatgaaagtgttacaa-tgcgttacaagaaattagcttata 20284197  T
Q  419 cgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 517  Q
     ||| ||||| |||||| | |||||||||| || || || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||    
T  20284198 agcttacaaaagaacaagtcctaatttctacccttttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcct 20284297  T
Q  518 tcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    |||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  20284298 tccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 20284351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 398 - 554
Target Start/End: Complemental strand, 5817278 - 5817122
Alignment:
Q  398 gttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacact 497  Q
    |||||||||||||  ||||   ||||||||||||||||  |||||||||||||||| || ||||||| | ||||| |||||||||| |||| |||||||     
T  5817278 gttacaagaaatttgcataagagctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactctcaatgaatcctaagaaaaaacaca 5817179  T
Q  498 aaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||||| ||||| || |||||  |  ||| |||||||| |||||||| |||||||    
T  5817178 aaaggaagctttttgatccttccaatggtgaaatctcactccccaaggtatttacaa 5817122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 220 - 554
Target Start/End: Original strand, 29159715 - 29160050
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| |  ||||   |||||||||| |||||| ||    
T  29159715 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacacaccaagattgttgac 29159814  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| |||||||| | | | ||| |||| |  ||||||| || ||||||||| | | || ||||||   |||||||||||||| | ||      
T  29159815 ccagttcggtccaatatgacctaatctaggggagagagca--gctctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttaca 29159912  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaat--gaatccaaagagaaaacactaaaggaagattttttatt 515  Q
     ||| ||| ||||||||   |||||||||| ||||| |||  ||||||| | ||||||||  |||||| |||||||||||| |||||||| ||||| ||     
T  29159913 agcttacacaagaacaagacctaatttctacccatt-tttgtgtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatc 29160011  T
Q  516 cttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||||  |  ||| |||||||||||||||||||||||||    
T  29160012 cttccaatgttgaaatctcactacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 258 - 447
Target Start/End: Complemental strand, 28617372 - 28617184
Alignment:
Q  258 cataatcaaagcaacaaagataagcaagaagggaaggagacaa-cacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaagag 356  Q
    |||| ||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||||| | ||| |||||||||| ||| ||  ||||    
T  28617372 catattcaaagcaacaaagataagcaagaaaggaagaaaacaaacacaccaatattgtttacccagttcggtccaatatgacctactctggggg--agag 28617275  T
Q  357 aatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttcta 447  Q
    |  |||||||| || ||||| ||| | | ||||||||    |||||||||||||| | ||   ||||||||||||||||  ||||||||||    
T  28617274 agcagctctccaatccactaagatgaaagtgatacaatggggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttcta 28617184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 220 - 554
Target Start/End: Original strand, 55860 - 56194
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa--gaagggaaggagacaacacaccaacattgttta 317  Q
    ||||||||||||||||||||||  ||||||| || |  |||||||||||| ||||||||||||||  ||||| |||||   |||||||||| ||| || |    
T  55860 aaacagacctagatctaagtatagagcaacaccacaagcataatcaaagc-acaaagataagcaatggaaggaaaggaacaaacacaccaagattattga 55958  T
Q  318 cccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatat 417  Q
    ||||||||| | ||| |||||||| | ||| |   |||||  ||| |||| || ||||||||| | | || ||||||   |||||||||||||| | |||    
T  55959 cccagttcggtccaatatgacctaatctgggg---agagagcagccctccaatccactatgatgaaagtgttacaaaagagttacaagaaattagcttat 56055  T
Q  418 tcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactc---acaatgaatccaaagagaaaacactaaaggaagatttttta 513  Q
      ||| ||| ||||||||   |||||||||| ||||  |||  ||||||| |||||   | ||||||||| |||||||||||| ||| |||| ||||| |    
T  56056 aagcttacacaagaacaagacctaatttctacccat--tttgtgtcacccacactctcaataatgaatcctaagagaaaacacaaaaagaagctttttga 56153  T
Q  514 ttcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    | |||||  |  ||| |||||||||||||||||||||||||    
T  56154 tccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 213 - 552
Target Start/End: Complemental strand, 2647888 - 2647551
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||| ||| ||    
T  2647888 caacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacatcaagat 2647789  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaatta 411  Q
    |||| ||||| ||||   ||| |||||||| | ||| ||| |||| |  || |||| || ||||||||| | | || ||||||   ||||||||||||||    
T  2647788 tgttgacccaattcggcccaatatgacctattctgggggagagagca--gccctccaatccactatgatgaaagtgttacaaaagagttacaagaaatta 2647691  T
Q  412 acatattcgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagatttt 510  Q
     | |||  ||| ||| ||||||||   |||||||||| ||||| | |  ||||||| ||||| |||||||||| |||||||||||| ||| |||| ||||    
T  2647690 gcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactctcaatgaatcctaagagaaaacacaaaatgaagttttt 2647593  T
Q  511 ttattcttcctctaatgagatctcactacccaaggtgtttac 552  Q
    | || |||||  |  ||| |||||||||||||||||| ||||    
T  2647592 tgatccttccaatggtgaaatctcactacccaaggtgcttac 2647551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 389 - 544
Target Start/End: Original strand, 3047335 - 3047489
Alignment:
Q  389 tacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaaga 488  Q
    |||||||  |||||||||||| ||| ||   |||||||||||||||   |||||||||| ||||| |||||||||||| ||||| |||||||||  ||||    
T  3047335 tacaaatgagttacaagaaatcaacttaaaagctcacaaagaacaagacctaatttctacccatt-tttaagtcacccacactctcaatgaatcttaaga 3047433  T
Q  489 gaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaag 544  Q
     ||||||| |||||||| ||||| || |||||  | |||| |||||||||||||||    
T  3047434 taaaacacaaaaggaagctttttgatccttccaatgatgaaatctcactacccaag 3047489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 398 - 572
Target Start/End: Complemental strand, 23403022 - 23402848
Alignment:
Q  398 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 496  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||| | ||||| |||||||||| ||||||||||||    
T  23403022 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcacatcactcacactctcaatgaatcctaagagaaaacac 23402923  T
Q  497 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
     |||||||| ||||| ||  ||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  23402922 aaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 23402848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 572
Target Start/End: Complemental strand, 9185153 - 9185009
Alignment:
Q  427 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 526  Q
    |||||||| | |||||||||| ||||| || |  |||||| |||||  ||||||||| ||||||||||||  ||||||| ||||| || |||||  |  |    
T  9185153 aagaacaagtcctaatttctacccatttttcatatcacccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggt 9185054  T
Q  527 gagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    || ||||||||||||||||||||||| |||| |||||||| |||||    
T  9185053 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9185009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 572
Target Start/End: Complemental strand, 9189986 - 9189842
Alignment:
Q  427 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 526  Q
    |||||||| | |||||||||| ||||| || |  |||||| |||||  ||||||||| ||||||||||||  ||||||| ||||| || |||||  |  |    
T  9189986 aagaacaagtcctaatttctacccatttttcatatcacccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggt 9189887  T
Q  527 gagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    || ||||||||||||||||||||||| |||| |||||||| |||||    
T  9189886 gaaatctcactacccaaggtgtttac-aatgtttcccaacccaaga 9189842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 427 - 554
Target Start/End: Original strand, 2580508 - 2580635
Alignment:
Q  427 aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaat 526  Q
    |||||||| | ||| |||||| ||||| || |  |||||| ||||| |||||||||| |||||||||||| |||||||| ||||| || ||| |  |  |    
T  2580508 aagaacaagtcctagtttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggt 2580607  T
Q  527 gagatctcactacccaaggtgtttacaa 554  Q
    || |||||||||||||||||||||||||    
T  2580608 gaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 572
Target Start/End: Complemental strand, 9235591 - 9235417
Alignment:
Q  398 gttacaagaaattaacatattcgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacac 496  Q
    |||||||||||||| | |||  ||| ||||| |||||| | |||||||||| ||||| || |  |||||||||||| ||| |||||| ||||||||||||    
T  9235591 gttacaagaaattagcttataagcttacaaaagaacaagtcctaatttctacccatttttcatatcacccgcactctcaacgaatcctaagagaaaacac 9235492  T
Q  497 taaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
     |||||||| ||||| || ||| |  |  ||| || |||||| ||||||||||||| |||| |||||||| |||||    
T  9235491 aaaaggaagctttttgatccttgcaatggtgaaatatcactatccaaggtgtttac-aatgtttcccaacccaaga 9235417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 571
Target Start/End: Original strand, 49091512 - 49091924
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa-----acagacctagatctaagtatgaagcaacatcagac 256  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| ||||| ||||||||||||     |||||||||||| ||||| |  ||||||| || |     
T  49091512 agatgtgtggagcaaaggaagtggtaatcaatagataaagt-gtctccaagcaacaacaacaaaaacagacctagatttaagtgtagagcaacaccacaa 49091610  T
Q  257 acataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgacctactttggaggaaaga 355  Q
     ||||||||||||| ||||||||||||| ||| | |||||   ||| |||||| |||||| ||||||||   | ||| |||||||| | ||| |  ||||    
T  49091611 gcataatcaaagca-caaagataagcaatgaaagaaaggaacaaacgcaccaagattgttgacccagtttagtccaatatgacctaatctgggg--aaga 49091707  T
Q  356 gaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcaca-aagaacaaattctaatttctatccatta 454  Q
    ||  | |||||| || ||||||||| | | || ||||||   |||||||||||||| | |||  ||| ||| ||||||||   |||||||||| |||||     
T  49091708 gagcaactctccaatccactatgatgaaagtgttacaaaagagttacaagaaattaccttataagcttacacaagaacaagacctaatttctacccattc 49091807  T
Q  455 tttaagtcacccgcactcac---aatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttta 551  Q
    | |  ||||||| ||||| |   ||||||||| |||||||||||| |||||||| ||||| || |||||  |  ||| |||||||||||||||||||||     
T  49091808 tgt--gtcacccacactctccataatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttt 49091905  T
Q  552 caaatggttcccaacacaag 571  Q
    | |||| |||||||| ||||    
T  49091906 c-aatgtttcccaacccaag 49091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 220 - 554
Target Start/End: Complemental strand, 4796852 - 4796520
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||  | |||||   |||||||||| |||||| ||    
T  4796852 aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgagagaaaggaacaaacacaccaagattgttaac 4796753  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | |||||||||||| | ||| ||  ||| |  ||| |||  || ||||||||| | | || ||||||   |||||||||||||| | |||     
T  4796752 ccagttcggtccaaaatgacctaatctggggg--agaaagcagccctcaaatccactatgatgaaattgttacaaaagagttacaagaaattagcttata 4796655  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 517  Q
     ||| ||| ||||||||   || |||| || ||||  |||  ||||||  || || |||||||||| |||||||||||| ||| |||| ||||| || ||    
T  4796654 agcttacacaagaacaagacctcatttatacccat--tttgtgtcacctacattctcaatgaatcctaagagaaaacacaaaaagaagctttttgatcct 4796557  T
Q  518 tcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||  |  ||| |||||||||||||||||||||||||    
T  4796556 tccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 550
Target Start/End: Complemental strand, 45685727 - 45685601
Alignment:
Q  424 acaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattcttcctct 523  Q
    ||||||||||||   ||||||||||||||| |||||||||| |  | || |||||||||| |||||||||||  |||| ||| |||||||| ||| || |    
T  45685727 acaaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaacaagaaagaaagtttttttatcctttcttt 45685628  T
Q  524 aatgagatctcactacccaaggtgttt 550  Q
     ||||||||| |||| | |||||||||    
T  45685627 gatgagatctgactatcaaaggtgttt 45685601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 554
Target Start/End: Complemental strand, 33332635 - 33332302
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    ||||| ||||| |||||||| |  ||||||| || |  |||||||||| ||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  33332635 aaacaaacctaaatctaagtgtagagcaacaccataagcataatcaaatcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 33332536  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    ||||||||||  || |||||||| | ||| ||| |||| |  || |||| || ||||| ||| | | || ||||||   |||||||||||||| | |||     
T  33332535 ccagttcgatctaatatgacctaatctgggggagagagca--gccctccaatccactaagatgaaagtgttacaaaagagttacaagaaattagcttata 33332438  T
Q  419 cgctcacaaa-gaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttttattct 517  Q
     ||| ||||| ||||||   ||||||||||  |||| ||  | |||| | ||||| |||||| ||| |||||||||||| || ||||| ||||| || ||    
T  33332437 agcttacaaaagaacaagacctaatttctactcatttttgta-tcacgcacactctcaatgattcctaagagaaaacacaaagggaagctttttgatcct 33332339  T
Q  518 tcctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |||  |  ||| ||||||||||||||| |||||||||    
T  33332338 tccaatggtgaaatctcactacccaagatgtttacaa 33332302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 552
Target Start/End: Original strand, 761219 - 761416
Alignment:
Q  354 gagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatattcgctcacaaagaacaaattctaatttctatccatt 453  Q
    |||| |||||||||||| |||||||  | |||||| ||||||| ||||||| |||| | |  |   |||||||||||| |||  |||||||||| |||||    
T  761219 gagactagctctccgatccactatgtaaggaatgacacaaataggttacaataaatgagctcaaaagctcacaaagaaaaaacactaatttctacccatt 761318  T
Q  454 atttaagtcacccgcactcacaatgaatcca---aagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgttt 550  Q
     || ||||||     |||||||||| ||||    |||||  ||||||||| |||  ||||| || |||||||||||||||||||||||| ||| ||| ||    
T  761319 tttcaagtcat----actcacaatgcatcctcctaagaggtaacactaaatgaaactttttgatccttcctctaatgagatctcactactcaaagtgctt 761414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 341
Target Start/End: Complemental strand, 9190241 - 9190071
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagca 270  Q
    ||||||||| ||||||||||  |||||| ||||| ||||||||||||    ||| |||||||||||||| |  ||||||| || |  ||||| |||||||    
T  9190241 aaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaacaaacctagatctaagtgtagagcaacaccacaagcataaacaaagca 9190143  T
Q  271 acaaagataagcaa-gaagggaaggagacaacacaccaacattgtttacccagttcgatgcaaaatgaccta 341  Q
    | |||||||||||| ||| |  ||||   |||||||||| |||||| |||||||||| | ||| ||||||||    
T  9190142 ataaagataagcaatgaaagagaggaacaaacacaccaagattgttgacccagttcggtccaatatgaccta 9190071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 46516237 - 46516140
Alignment:
Q  474 caatgaatccaaagagaaaacactaaaggaagattttttattcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
    |||||||||  |||||||||||| ||| |||| ||||| || |||||  |  ||| ||||||||||||||||||||||| |||| |||||||| |||||    
T  46516237 caatgaatcttaagagaaaacacaaaatgaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaaga 46516140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 46516502 - 46516373
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| |||||||| || |||||||| | |||||||| || |  |||||||||||||| | |||||| ||| ||| | |||||   |||||||||| ||    
T  46516502 caacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaagcaatagagataaacaatgaaagaaaggaacaaacacaccaagat 46516403  T
Q  312 tgtttacccagttcgatgcaaaatgaccta 341  Q
    |||| |||||||||| | ||| ||||||||    
T  46516402 tgttgacccagttcggtccaatatgaccta 46516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 281
Target Start/End: Original strand, 27984294 - 27984460
Alignment:
Q  124 tgttgtgaattcaaactaataa-taataccaatagaacttagatgtgtagattaaaggaagtagta--atcaatgaataaagtagtctcaagc------a 214  Q
    |||||||||||||||| ||||| | | | ||||| |||||| |||| | ||  ||||||| |||||  |||||||||||||||||||| ||||      |    
T  27984294 tgttgtgaattcaaacaaataaatcacatcaataaaacttatatgtttggagcaaaggaattagtataatcaatgaataaagtagtcttaagcaacgata 27984393  T
Q  215 acaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataag 281  Q
    |||||||||| || || |||||||| |||||||| | || | ||||| | |||| ||||||||||||    
T  27984394 acaacaaacaaacttatatctaagtgtgaagcaataacacaaacatatttaaagaaacaaagataag 27984460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 23575564 - 23575488
Alignment:
Q  214 aacaacaaacagacctagatctaagtatgaagcaacatcaga--cacataatcaaagcaacaaagataagcaagaag 288  Q
    ||||||||||| |||||||||||||| ||||||| | |||||  || | || ||||||||| |||||||| ||||||    
T  23575564 aacaacaaacaaacctagatctaagtgtgaagcatcgtcagaggcataaaaccaaagcaactaagataagaaagaag 23575488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 27984633 - 27984686
Alignment:
Q  458 aagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaagattttt 511  Q
    ||||||||| ||||||||||||||||  |||||||| |||||| |||| |||||    
T  27984633 aagtcacccacactcacaatgaatccttagagaaaatactaaatgaaggttttt 27984686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 9185396 - 9185284
Alignment:
Q  176 aaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagacacataatcaaagca 270  Q
    ||||||||| ||||||||||  |||||| ||||| ||||||||||||    |||||||||||||||||| |  || |||| || |  ||||| |||||||    
T  9185396 aaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaacaaaacagacctagatctaagtgtagagaaacaccacaagcataaacaaagca 9185298  T
Q  271 acaaagataagcaa 284  Q
    | ||||||||||||    
T  9185297 ataaagataagcaa 9185284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 554
Target Start/End: Original strand, 5595 - 5930
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||||||||||||||| |  || |||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  5595 aaacagacctagatctaagtgtagagaaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 5694  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| |||||||| | ||| ||  |||||  ||| || | || ||||||||| | | || ||||||   | |||||||||||| | |||     
T  5695 ccagttcggtccaatatgacctaatctggggg--agagagcagcccttcaatccactatgatgaaagtgttacaaaagagatacaagaaattagcttata 5792  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca---atgaatccaaagagaaaacactaaaggaagattttttat 514  Q
     ||| ||| ||||||||    |||||||||  |||  |||  ||||||| ||||| ||   |||||||| |||||||||||| |||||||| ||||| ||    
T  5793 agcttacacaagaacaagacttaatttctactcat--tttgtgtcacccacactctcaatgatgaatcctaagagaaaacacaaaaggaagctttttgat 5890  T
Q  515 tcttcctctaatgagatctcactacccaaggtgtttacaa 554  Q
     |||||  |  ||| |||||||||||||||||||||||||    
T  5891 ccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 572
Target Start/End: Original strand, 2404 - 2756
Alignment:
Q  220 aaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacattgtttac 318  Q
    |||||||||||||||||||| |  | ||||| || |  |||||||||||||| |||||||||||| ||| | |||||   |||||||||| |||||| ||    
T  2404 aaacagacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataagcaatgaaagaaaggaacaaacacaccaagattgttgac 2503  T
Q  319 ccagttcgatgcaaaatgacctactttggaggaaagagaatagctctccgattcactatgataagaatgatacaaatatgttacaagaaattaacatatt 418  Q
    |||||||| | ||| |||||||| | ||| ||  ||| |  ||| |||| || ||||||||| | | || ||||||    ||| ||||||||| | |||     
T  2504 ccagttcgctccaatatgacctaatctggggg--agacagcagccctccaatccactatgatgaaagtgttacaaaagaattataagaaattagcttata 2601  T
Q  419 cgctcaca-aagaacaaattctaatttctatccattatttaagtcacccgcactcaca---atgaatccaaagagaaaacactaaaggaagattttttat 514  Q
     ||| ||| ||||||||   |||||||||| ||||  |||  ||||||| ||||| ||   |||||||| |||| ||||||| |||||||| ||||| ||    
T  2602 agcttacacaagaacaagaactaatttctacccat--tttgtgtcacccacactctcaatgatgaatcctaagataaaacacaaaaggaagctttttgat 2699  T
Q  515 tcttcctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaaga 572  Q
     |||||  |  ||| |||||||||| |||||||||||| |||| |||||||| |||||    
T  2700 ccttccaatggtgaaatctcactacgcaaggtgtttac-aatgtttcccaacccaaga 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 85535 - 85659
Alignment:
Q  163 agatgtgtagattaaaggaagtagtaatcaatgaataaagtagtctc-aagcaacaacaa----acagacctagatctaagtatgaagcaacatcagaca 257  Q
    |||||||||||  ||||||||| ||||||||||  |||||| ||||| ||||||||||||    |||||||||||||||||| |  |||||||||| |      
T  85535 agatgtgtagagcaaaggaagtggtaatcaatgtgtaaagt-gtctccaagcaacaacaataaaacagacctagatctaagtgtagagcaacatcacaag 85633  T
Q  258 cataatcaaagcaacaaagataagcaa 284  Q
    ||||| |||||| ||||||||||||||    
T  85634 cataaccaaagc-acaaagataagcaa 85659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 10634 - 10778
Alignment:
Q  213 caacaacaaacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacaaagataagcaa-gaagggaaggagacaacacaccaacat 311  Q
    |||||| ||||||||||| |||||||| |  ||||||| || |  |||||||||||||| |||||||||||| ||| |  ||||   |||||||||| ||    
T  10634 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacacaccaagat 10733  T
Q  312 tgtttacccagttcgatgcaaaatgacctactttggaggaaagag 356  Q
    | || |||||||||| | ||| |||||||| ||||| ||| ||||    
T  10734 tattgacccagttcggtccaatatgacctaatttgggggagagag 10778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 554
Target Start/End: Original strand, 23643 - 23777
Alignment:
Q  420 gctcacaaagaacaaattctaatttctatccattatttaagtcacccgcactcacaatgaatccaaagagaaaacactaaaggaag-attttttattctt 518  Q
    ||||||||| |||||  ||||||||||| ||||| || | ||||  | |||||||||||||||| |||||||||||| ||| || |  |||||||| |||    
T  23643 gctcacaaaaaacaagatctaatttctacccatt-ttcatgtcagacacactcacaatgaatcctaagagaaaacacaaaatgatgccttttttatcctt 23741  T
Q  519 cctctaatgagatctcactacccaaggtgtttacaa 554  Q
    |   |  ||| |||||||||||||||||| ||||||    
T  23742 ctaatggtgacatctcactacccaaggtgattacaa 23777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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