View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18512_low_20 (Length: 323)
Name: NF18512_low_20
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_20 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0015 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 13162161 - 13162473
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaa-ggtttt |
110 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13162161 |
acagacaatgatcagcccaatacttctacaaaaccttcttctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaaggtttt |
13162260 |
T |
|
| Q |
111 |
ggacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatg |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13162261 |
ggacatatagcttcaaattgtccaacccgaagaaccatcaccatcatcaaaggagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatg |
13162360 |
T |
|
| Q |
211 |
aaaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13162361 |
aaaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgttcagacgaagcctacacgcgatgtcagc |
13162460 |
T |
|
| Q |
311 |
ccaagaagagcat |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13162461 |
ccaagaagagcat |
13162473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 11712953 - 11713264
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11712953 |
acagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggttttg |
11713052 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
11713053 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
11713152 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11713153 |
aaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcgatgtcagct |
11713252 |
T |
|
| Q |
312 |
caagaagagcat |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11713253 |
caagaagagcat |
11713264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 27990 - 27679
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27990 |
acagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggttttg |
27891 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
27890 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
27791 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27790 |
aaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcgatgtcagct |
27691 |
T |
|
| Q |
312 |
caagaagagcat |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27690 |
caagaagagcat |
27679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 88099 - 88410
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
88099 |
acagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggttttg |
88198 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
88199 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
88298 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88299 |
aaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcgatgtcagct |
88398 |
T |
|
| Q |
312 |
caagaagagcat |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
88399 |
caagaagagcat |
88410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 13721575 - 13721264
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13721575 |
acagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggttttg |
13721476 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
13721475 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
13721376 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13721375 |
aaaagaagaagtgttagagccaatttatgatgaagagctcattgttgttgatcatggcgagtctctggtgatcagacgaagcctacacgcgatgtcagct |
13721276 |
T |
|
| Q |
312 |
caagaagagcat |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13721275 |
caagaagagcat |
13721264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 5381808 - 5381497
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5381808 |
acagacaacgatcagcctagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggttttg |
5381709 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
5381708 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
5381609 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5381608 |
aaaagaagaagttttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacgatgtcagct |
5381509 |
T |
|
| Q |
312 |
caagaagagcat |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5381508 |
caagaagagcat |
5381497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 14475338 - 14475027
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14475338 |
acagacaacgatcagcccagtacttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggttttg |
14475239 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
14475238 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
14475139 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14475138 |
aaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcgatgtcagct |
14475039 |
T |
|
| Q |
312 |
caagaagagcat |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14475038 |
caagaagagcat |
14475027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 42376971 - 42377279
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42376971 |
acagacaacgatcagcccagtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaaggttttg |
42377070 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
42377071 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
42377170 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42377171 |
aaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctacacgcgatgtcagct |
42377270 |
T |
|
| Q |
312 |
caagaagag |
320 |
Q |
| |
|
||||||||| |
|
|
| T |
42377271 |
caagaagag |
42377279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 2795588 - 2795281
Alignment:
| Q |
12 |
acagacaacgatcaacccaatacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttg |
111 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
2795588 |
acagacaacgatcagcccaacacttctacaaaaccttcttctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatttcaaggttttg |
2795489 |
T |
|
| Q |
112 |
gacatataacttcaaattgtccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatga |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| || |
|
|
| T |
2795488 |
gacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccaga |
2795389 |
T |
|
| Q |
212 |
aaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcc |
311 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2795388 |
aaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctacacgcgatgtcagct |
2795289 |
T |
|
| Q |
312 |
caagaaga |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
2795288 |
caagaaga |
2795281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 34429187 - 34429251
Alignment:
| Q |
93 |
ttcaaatgtcaaggttttggacatataacttcaaattgtccaacccgaagaaccattaccatcat |
157 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | |||||| ||||||||| |||||||| |
|
|
| T |
34429187 |
ttcaaatgtcaaggtattggacatataacttcaagcttctcaacccaaagaaccatcaccatcat |
34429251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 32 - 323
Target Start/End: Complemental strand, 16776212 - 16775921
Alignment:
| Q |
32 |
tacttctacaaaaccttctcctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaaggttttggacatataacttcaaattgt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16776212 |
tacttctacaaaaccttctcctaaacccactacagattataaacccaaagctaccaagtgtttaaaatgtcaaggttttggacatatagcttcaaattgt |
16776113 |
T |
|
| Q |
132 |
ccaacccgaagaaccattaccatcatcaaagcagaagcttatgaagaagatgaagagaaaacaaatcgggatgaacatgaaaaagatgtagagttagagc |
231 |
Q |
| |
|
||||| |||||||| || ||||||||||||| ||||||||||||||| | ||| ||| ||||||| || ||||||| |||||||| | || |||||||| |
|
|
| T |
16776112 |
ccaacacgaagaacgatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgagatgaaccagaaaaagaagaagtgttagagc |
16776013 |
T |
|
| Q |
232 |
caatttatgatgaagagctcattgttgctgatcatgacgagtctctggtgatcagacgaagcctacacgcgatgtcagcccaagaagagcat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
16776012 |
caatttatgatgaagagctcattgttgctgatcatggcgaatctctagtgataagacgaagcctacacacgatgtcagctcaagaagagcat |
16775921 |
T |
|
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