View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_24 (Length: 283)
Name: NF18512_low_24
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 4077955 - 4078206
Alignment:
| Q |
15 |
tagcatagtaggaataacataaggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagta |
114 |
Q |
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| T |
4077955 |
tagcatagtaggaataacagaaggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagta |
4078054 |
T |
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| Q |
115 |
gcagtgatgattagtggagaagaagatttaggaatggttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattgga |
214 |
Q |
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| T |
4078055 |
gcagtgatgattagtggagaagaagatttaggaatggttgacacatagaatatattcacacaagtgagggtggcacataacaagggtgagattgattgga |
4078154 |
T |
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| Q |
215 |
taatagatgaaatttatgccttgttcgactgcaaaaaactagggaggatatg |
266 |
Q |
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| T |
4078155 |
taatagatgaaatttatgccttgttcgactccaaaaaactagggaggatatg |
4078206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 4100846 - 4100961
Alignment:
| Q |
151 |
gttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattggataatagatgaaatttatgccttgttcgactgcaaaa |
250 |
Q |
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| T |
4100846 |
gttgacacgtagaatatattcacacaagtgagggtggcacataacaagggtgagattgattggataatagatgaaatttatgccttgttcaactgcaaaa |
4100945 |
T |
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| Q |
251 |
aactagggaggatatg |
266 |
Q |
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| T |
4100946 |
aactagggaggatatg |
4100961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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