View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_25 (Length: 273)
Name: NF18512_low_25
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 33306094 - 33305844
Alignment:
| Q |
1 |
agaatatctgccacttgttcatttgaggagataggcagtaggtgaagaattcctgattgaaatttatctctcactacatggcagtctatttctatgtgat |
100 |
Q |
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| T |
33306094 |
agaatatctgccacttgttcatttgaggagataggcagtaggtgaagaattcctgattgaaatttatctctcaccacatggcagtctatttctatgtgat |
33305995 |
T |
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| Q |
101 |
ttgta--ctcatgaaaactggattagctgctatgtgcatagctgatttattgtcacagt-----atgattggtgaagaatgagatatttgaaaatcctgc |
193 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33305994 |
ttgtactctcatgaaaactggattagctgctatgtgcatagctgatttattgtcacagtagatgatgattggtgaagaatgagatatttgaaaatcctgc |
33305895 |
T |
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| Q |
194 |
aataagtatggcagcaattacccttcacaggttgcttgaggaagggctttg |
244 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33305894 |
aataagtatggcagcaattgcccttcacaggttgcttgaggaagggctttg |
33305844 |
T |
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