View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18512_low_26 (Length: 250)
Name: NF18512_low_26
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_26 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 1092761 - 1092521
Alignment:
| Q |
10 |
ataattcttaatgcaaagaaaaatgtatgagtttggtgttctaaaatatttatagttgatgtcttgagattttgcattttgcaagtgtttgtgatatagt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092761 |
ataattcttaatgcaaagaaaaatgtatgagtttggtgttctaaaatatttatagttgatgtcttgagattttgcattttgcaagtgtttgtgatatagt |
1092662 |
T |
|
| Q |
110 |
tctctttctatcacaggagatatggaattcaagcagaacaagtatttgcctgctgaaaagcaggttgtgactgctgatcctgacgtaacttcggtaagta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092661 |
tctctttctatcacaggagatatggaattcaagcagaacaagtatttgcctgctgaaaagcaggttgtgactgctgatcctgacgtaacttcggtaagta |
1092562 |
T |
|
| Q |
210 |
ttgctttgtgtattatgcactacaaagaagataagacttgt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092561 |
ttgctttgtgtattatgcactacaaagaagataagacttgt |
1092521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University