View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_3 (Length: 617)
Name: NF18512_low_3
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 74 - 613
Target Start/End: Complemental strand, 402086 - 401555
Alignment:
| Q |
74 |
caatttggttcctgataatgtgactaaaatttttaattttaaggatcattttgaaattacgttaatttcagagactaaattgcttgactcttacaatttc |
173 |
Q |
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| T |
402086 |
caatttggttcctgataatgtgactgaaatttttaattttaaggatcattttgaaatgacattaatttcagagactaaattgcttgactcttacaatttc |
401987 |
T |
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| Q |
174 |
aaggactagattactgattcacccaattggaatcaaatgtttgcatgtaattgattgagattattgtgcctgcctgcgcatgtgctgtcaggttgagaat |
273 |
Q |
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| T |
401986 |
aaggactagattagtgattcacccaattggaatcaaatgtttgcatgtaattgattgagattattgtgcctgcctgc--------tgtcaggttgagaat |
401895 |
T |
|
| Q |
274 |
ctattctataatatggctgcaaggaagaagacactacaaaattcttcagatgattactcaaagatagtggatgttgtcagtcggtttgcaatacatcata |
373 |
Q |
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| T |
401894 |
ctattctataatatggctgcaaggaagaagacactacaaaattcttcagatgattactcaaagatagtggatgttgtcagtcggtttgcaatacatcata |
401795 |
T |
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| Q |
374 |
ccaacgtcagtttctcttgcagaaaggttggnnnnnnnaacttgaacgataaaattaagcttatttatcgctacattattatagaggcatgcgttttgag |
473 |
Q |
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| T |
401794 |
ccaatgtcagtttctcttgcagaaaggttggtttttttaacttgaacgataaaattaagcttatttatcgctacattattatagaggcatgcgttgtgag |
401695 |
T |
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| Q |
474 |
ttatatatgttaattaattttcattgatttcggactttactgttactatcagcatggagctgttaaagcagatgttcacactgtggccacatcttcaagg |
573 |
Q |
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| T |
401694 |
ttatatatgttaattaattttaattgatttcggactttactgttactatcagcatggagctgttaaagcagatgttcacaccgtggccacgtcttcaagg |
401595 |
T |
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| Q |
574 |
cttgatgccatcagaacagtttatggggtctctgctgctc |
613 |
Q |
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| T |
401594 |
cttgatgccatcagaacagtttatggggtctcagctgctc |
401555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 402196 - 402131
Alignment:
| Q |
19 |
attattaggatgttttattttgattaattcaatctctgaaattgtaggtgacatgcaatttggttc |
84 |
Q |
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| T |
402196 |
attattaggatgttttattttgattaattcaatctctgaaattgtaggtgacatgcaatatggttc |
402131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 34618350 - 34618382
Alignment:
| Q |
147 |
actaaattgcttgactcttacaatttcaaggac |
179 |
Q |
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| T |
34618350 |
actaaattgcttgactcttacaatttcaaggac |
34618382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 34745787 - 34745819
Alignment:
| Q |
147 |
actaaattgcttgactcttacaatttcaaggac |
179 |
Q |
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| T |
34745787 |
actaaattgcttgactcttacaatttcaaggac |
34745819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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