View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18512_low_32 (Length: 215)
Name: NF18512_low_32
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_32 |
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| [»] scaffold0015 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 13162804 - 13162641
Alignment:
| Q |
20 |
cataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtcttg |
119 |
Q |
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| T |
13162804 |
cataacaatcatgatgggcacgacgatcgtatttctagggtcttccaatgagaagatgacatgcatccattggaacgacatcacaccaaacttgatcttg |
13162705 |
T |
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| Q |
120 |
atacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13162704 |
atacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactaactttg |
13162641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 11713597 - 11713432
Alignment:
| Q |
18 |
ggcataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtct |
117 |
Q |
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| T |
11713597 |
ggcataacaatcatgatgggcacgacgatcgtattgccagggtcttccaaggagaagatgacatgcatccattgggacgacatcacaccaaacttgatct |
11713498 |
T |
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| Q |
118 |
tgatacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
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|||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||| |
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| T |
11713497 |
tgatacttctgaccaatggaaaaactcacaaggcaacgcttcgtaaccttcacttcactacctttg |
11713432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 27346 - 27511
Alignment:
| Q |
18 |
ggcataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtct |
117 |
Q |
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||||||||||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
27346 |
ggcataacaatcatgatgggcacgacgatcgtattgccagggtcttccaaggagaagatgacatgcatccattgggacgacatcacaccaaacttgatct |
27445 |
T |
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| Q |
118 |
tgatacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
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|||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||| |
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| T |
27446 |
tgatacttctgaccaatggaaaaactcacaaggcaacgcttcgtaaccttcacttcactacctttg |
27511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 88743 - 88578
Alignment:
| Q |
18 |
ggcataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtct |
117 |
Q |
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||||||||||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
88743 |
ggcataacaatcatgatgggcacgacgatcgtattgccagggtcttccaaggagaagatgacatgcatccattgggacgacatcacaccaaacttgatct |
88644 |
T |
|
| Q |
118 |
tgatacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
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|||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||| |
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| T |
88643 |
tgatacttctgaccaatggaaaaactcacaaggcaacgcttcgtaaccttcacttcactacctttg |
88578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 5381164 - 5381329
Alignment:
| Q |
18 |
ggcataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtct |
117 |
Q |
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||||||||||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
5381164 |
ggcataacaatcatgatgggcacgacgatcgtattgccatggtcttccaaggagaagatgacatgcatccattgggacgacatcacaccaaacttgatct |
5381263 |
T |
|
| Q |
118 |
tgatacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
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|||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||| |
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| T |
5381264 |
tgatacttctgaccaatggaaaaactcacaaggcaacgcttcgtaaccttcacttcactacctttg |
5381329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 13720931 - 13721096
Alignment:
| Q |
18 |
ggcataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtct |
117 |
Q |
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||||||||||| ||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
13720931 |
ggcataacaatcatgatgggcacgacgatcgtattgtcagggtcttccaaggagaagatgacatgcatccattggaacgacatcgcaccaaacttgatct |
13721030 |
T |
|
| Q |
118 |
tgatacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
| |
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|||||||||||||||||||||||| |||||||| || || |||||| ||||||||||||||||| |
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| T |
13721031 |
tgatacttctgaccaatggaaaaactcacaaggaaacacttcgtaaccatcacttcactacctttg |
13721096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 16775600 - 16775753
Alignment:
| Q |
30 |
atgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtcttgatacttctga |
129 |
Q |
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||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
16775600 |
atgatgggcacgacgatcgtatttccagggtcttccaaggagaagatgacatgcatccattgggacgatatcacaccaaacttgatcttgatacttctga |
16775699 |
T |
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| Q |
130 |
ccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
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|||||||||||| ||| ||||||| | || |||||||||||||||||||||||| |
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| T |
16775700 |
ccaatggaaaaactcataaggcaacgcttcgtaaccttcacttcactacctttg |
16775753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 14474694 - 14474859
Alignment:
| Q |
18 |
ggcataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtct |
117 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
14474694 |
ggcataacaatcatgatgtgcacgacgatcatattgccagggtcttccaaggagaagatgacatgcatccattgggacgacatcacaccaaacttgatct |
14474793 |
T |
|
| Q |
118 |
tgatacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |
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| T |
14474794 |
tgatacttctgaccaatggaaaaactcacaaggcaacacttcgtaaccttcacttcactacctttg |
14474859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 2794944 - 2795109
Alignment:
| Q |
18 |
ggcataacaattatgatggacacgacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtct |
117 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||| ||| |||||||||||| || ||| |
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| T |
2794944 |
ggcataacaatcatgatgggcacgacgatcgtattgccagggtattccaaggagaagatgacatgcatccattgggacggcatcacaccaaatttgatct |
2795043 |
T |
|
| Q |
118 |
tgatacttctgaccaatggaaaaattcacaaggcaatgatttgtaaccttcacttcactacctttg |
183 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| | || |||||||||||||||||||||||| |
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|
| T |
2795044 |
tgatacttctgaccaatggaaaaactcacaagacaacgcttcgtaaccttcacttcactacctttg |
2795109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 90168 - 90069
Alignment:
| Q |
41 |
gacgatcgtatttccacggtcttccaataagaagatgacatgcatccattggaacgacatcacaccaaactttgtcttgatacttctgaccaatggaaaa |
140 |
Q |
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||||||| |||| ||| ||||| |||| ||| || ||||| |||||||| || | |||||||||||| || ||||||| ||||| || ||||||||||| |
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| T |
90168 |
gacgatcatattgccaaggtctcccaagaagcaggtgacaagcatccatggggatgacatcacaccatacattgtctttgtacttttgcccaatggaaaa |
90069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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