View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18512_low_4 (Length: 600)

Name: NF18512_low_4
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18512_low_4
NF18512_low_4
[»] chr2 (16 HSPs)
chr2 (121-583)||(2326786-2327247)
chr2 (179-571)||(2330513-2330904)
chr2 (121-584)||(2350806-2351268)
chr2 (278-559)||(2303255-2303535)
chr2 (278-571)||(2320944-2321236)
chr2 (278-538)||(2293663-2293922)
chr2 (278-571)||(2309961-2310253)
chr2 (1-66)||(2321428-2321493)
chr2 (1-66)||(2294113-2294178)
chr2 (1-66)||(2310444-2310509)
chr2 (1-63)||(2303729-2303791)
chr2 (1-66)||(2330996-2331061)
chr2 (2-66)||(2327281-2327345)
chr2 (1-66)||(2351302-2351367)
chr2 (121-243)||(2303570-2303692)
chr2 (191-243)||(2321272-2321324)
[»] chr8 (5 HSPs)
chr8 (20-352)||(26494607-26494939)
chr8 (179-302)||(26506702-26506825)
chr8 (1-66)||(41127308-41127373)
chr8 (474-571)||(41126822-41126919)
chr8 (20-85)||(26506901-26506966)
[»] chr5 (1 HSPs)
chr5 (20-66)||(15176356-15176402)
[»] chr4 (1 HSPs)
chr4 (20-66)||(55017087-55017133)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 121 - 583
Target Start/End: Complemental strand, 2327247 - 2326786
Alignment:
Q  121 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 220  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||  || || || ||||||||||| |||||||| ||||||||||||||||||||     
T  2327247 aaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaa 2327148  T
Q  221 taaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggaggatgacgccttaacccttccaaaaccacacacttcaaatacc 320  Q
    |||||||||||||| | ||| ||  ||||| || | || |      | ||   ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  2327147 taaccattcaaaaccacatcatcgctcactgcatgaggcaacacaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaatacc 2327048  T
Q  321 gaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtc 420  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2327047 gaagtttatgcaagtcttcctctttcacttcctccttctctacaacaccatcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtc 2326948  T
Q  421 cgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatc 520  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326947 cgggtacttcac-caaattcgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatc 2326849  T
Q  521 ctcagtcaacttctgtttttccattggcaactccaactccaaaagtgtatccacgtaggaaac 583  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326848 ctcagtcaacttccgtttttccattggcaactccaactccaaaagtgtatccacgtaggaaac 2326786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 179 - 571
Target Start/End: Complemental strand, 2330904 - 2330513
Alignment:
Q  179 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggag 278  Q
    ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||| | ||||||  ||||| |  | || |    | | ||   ||| |    
T  2330904 tctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaaatgccctggtg 2330805  T
Q  279 gatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacc 378  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||| |||||    
T  2330804 gatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctccagcatcatcgccacc 2330705  T
Q  379 catgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgt 478  Q
    ||| |||||  ||||||||| ||||||| |||  |||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||| ||    
T  2330704 catcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttc-accaaattcgccataatccattgcaaagcggtggaagtagtatccgt 2330606  T
Q  479 accagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtgtatc 571  Q
     ||| | ||||||||||||||||||||||||| ||||||||||||| |||| ||| |||| |||   |||||||||||||||| ||| |||||    
T  2330605 gccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcctgaggcaactccaactccataagagtatc 2330513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 121 - 584
Target Start/End: Complemental strand, 2351268 - 2350806
Alignment:
Q  121 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 220  Q
    ||||||||||||||||||| || | ||||||||||||||    ||||   | || || ||||||||||||||||| || ||||||||||||||||||||     
T  2351268 aaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaa 2351169  T
Q  221 taaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggaggatgacgccttaacccttccaaaaccacacacttcaaatacc 320  Q
    ||||| || ||||  | |||||| |||||  |  |||| |     |  ||    || ||||||||||| |||||||||||||||||||| |||| ||||     
T  2351168 taaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagataca 2351069  T
Q  321 gaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccacccatgacctccctaatctcctgcacaagcctcctttgaacgtc 420  Q
     |||||| ||||| |||||||||||||||||| |||||| | ||   ||||||| |||||| |||||||||||||| | ||||||||||| ||| |||||    
T  2351068 aaagtttctgcaaatcttcctctttcacttccaccttctctccatttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtc 2350969  T
Q  421 cgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatc 520  Q
     ||||||||||  |||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  2350968 ggggtacttcac-caaatttgccataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatc 2350870  T
Q  521 ctcagtcaacttctgtttttccattggcaactccaactccaaaagtgtatccacgtaggaaact 584  Q
     ||| |||| ||| |||| ||    |||||||||||||||||||| |||||||| || ||||||    
T  2350869 ttcactcaatttccgtttctcatcaggcaactccaactccaaaagagtatccacatacgaaact 2350806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 278 - 559
Target Start/End: Complemental strand, 2303535 - 2303255
Alignment:
Q  278 ggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccac 377  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||    |||||||||    
T  2303535 ggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttcacttcctccttctctccattctcatcaccac 2303436  T
Q  378 ccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctg 477  Q
    |||| ||||||| |||||||| |||||||||||| || || || |||||||| || |||||| ||||||||||| |||||||  |||||||||||||| |    
T  2303435 ccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtactt-aaccaaattcgccataatccattgcaaagtagtggaagtagtatccg 2303337  T
Q  478 taccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactc 559  Q
    | ||| |||||| |||||| ||||||||| |||||||||||| |||| |||||||  |||| |||   ||||||||||||||    
T  2303336 tcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactc 2303255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 278 - 571
Target Start/End: Complemental strand, 2321236 - 2320944
Alignment:
Q  278 ggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccac 377  Q
    ||||||||||| | ||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||| | ||    |||||| |     
T  2321236 ggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctctttcacttcctccttctctccattgtcatcactaa 2321137  T
Q  378 ccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctg 477  Q
    |||| ||||| | |||||||| |||||||||||  || || |||||||||||||  |||||| ||||||||||| |||||||| |||||||||||||| |    
T  2321136 ccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcac-caaattcgccataatccactgcaaagcagtggaagtagtatccg 2321038  T
Q  478 taccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtgtatc 571  Q
    | ||| | ||||||||||||||||||||| |||||||||||| |||| |||||||  |||| |||   |||||||||||||| ||||| |||||    
T  2321037 tcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactctaaaagagtatc 2320944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 278 - 538
Target Start/End: Complemental strand, 2293922 - 2293663
Alignment:
Q  278 ggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccac 377  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||    |||||||||    
T  2293922 ggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccac 2293823  T
Q  378 ccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctg 477  Q
    |||| ||||||| |||||||| |||||||||||  || || || |||||||||| | | ||| ||||||||||| ||||||   ||||||||||| ||||    
T  2293822 ccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcact-acattcgccataatccactgcaaactagtggaagtagtgtctg 2293724  T
Q  478 taccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgttt 538  Q
    | ||| | ||||||||||| ||||||||| |||||||||||| |||| ||| |||| ||||    
T  2293723 tcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgttt 2293663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 278 - 571
Target Start/End: Complemental strand, 2310253 - 2309961
Alignment:
Q  278 ggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccac 377  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | ||    |||||||||    
T  2310253 ggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcaccac 2310154  T
Q  378 ccatgacctccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaatcaaatttgccataatccaatgcaaagcggtggaagtagtatctg 477  Q
    |||| ||||||| |||||||| |||||||||||  |  || || ||||||||| | || ||| ||||||||||| | ||||   ||||||||||| ||||    
T  2310153 ccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttc-accacattcgccataatccactccaaactagtggaagtagtgtctg 2310055  T
Q  478 taccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtgtatc 571  Q
    | ||| | ||||||||||| ||||||||| |||||||||||| |||| ||| |||| |||| |||   ||| |||| ||||| ||||| |||||    
T  2310054 tcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctactctaactctaaaagagtatc 2309961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2321493 - 2321428
Alignment:
Q  1 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321493 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 2321428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2294178 - 2294113
Alignment:
Q  1 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2294178 caaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctcttt 2294113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2310509 - 2310444
Alignment:
Q  1 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2310509 caaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctcttt 2310444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2303791 - 2303729
Alignment:
Q  1 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctc 63  Q
    |||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||    
T  2303791 caaagctaaattaagtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctc 2303729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2331061 - 2330996
Alignment:
Q  1 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    |||||||||||||  ||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  2331061 caaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctcttt 2330996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 2327345 - 2327281
Alignment:
Q  2 aaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    ||||||||||||  ||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2327345 aaagctaaattatatcccggacaaattctcctaccagctccaaacggcatcatcttgatctcttt 2327281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2351367 - 2351302
Alignment:
Q  1 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    |||||||||||||  ||||||||| |||||||| ||| | ||||| ||||||||||||||||||||    
T  2351367 caaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctcttt 2351302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 2303692 - 2303570
Alignment:
Q  121 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 220  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||   | || || || |||| ||| |||||||| ||||||||||||||||||||     
T  2303692 aaacctttctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaa 2303593  T
Q  221 taaccattcaaaacaatatcctc 243  Q
    ||||| |||||||| | ||||||    
T  2303592 taaccgttcaaaaccacatcctc 2303570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 2321324 - 2321272
Alignment:
Q  191 aaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc 243  Q
    |||||||| |||||||||||||||||||| ||||| |||||||| | ||||||    
T  2321324 aaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctc 2321272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 26494939 - 26494607
Alignment:
Q  20 ggacaaattctccttccagctccaaacggcatcatctttatctcttttatacccctaacatcaaatgcgtcaaattcgtttctattttttgcatctttta 119  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494939 ggacaaatcctcctccctgctccaaacggcatcatctttatctcttttatacccctaacatcaaatgcgtcaaattcgtttctattttttgcatctttta 26494840  T
Q  120 gaaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494839 gaaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatctaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaa 26494740  T
Q  220 gtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggaggatgacgccttaacccttccaaaaccacacacttcaaatac 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||||     
T  26494739 gtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagtaggaggatgacgccttaacccttccaaaatcacagccttcaaatat 26494640  T
Q  320 cgaagtttatgcaagtcttcctctttcacttcc 352  Q
     | | ||| | ||| ||||||||| ||||||||    
T  26494639 ggcaatttctccaaatcttcctctctcacttcc 26494607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 26506825 - 26506702
Alignment:
Q  179 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggag 278  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| || ||||  | |||||| |||||| || ||||||||  ||||||||  ||||    
T  26506825 tctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtcactgcatgtggaattaagtagtgagaaggag 26506726  T
Q  279 gatgacgccttaacccttccaaaa 302  Q
    | || |||||||||||||| ||||    
T  26506725 ggtggcgccttaacccttctaaaa 26506702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41127373 - 41127308
Alignment:
Q  1 caaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    |||||||||||||  ||| |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  41127373 caaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatctcttt 41127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 571
Target Start/End: Complemental strand, 41126919 - 41126822
Alignment:
Q  474 tctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttctgtttttccattggcaactccaactccaaaagtgtatc 571  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||| ||| ||| |||  |||| |||   ||||||||||| |||||||| |||||    
T  41126919 tctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcctcgggcaactccaattccaaaagagtatc 41126822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 26506966 - 26506901
Alignment:
Q  20 ggacaaattctccttccagctccaaacggcatcatctttatctcttttatacccctaacatcaaat 85  Q
    |||||||| |||||||| |||||||| ||||||||||||||||| |||  |||  |||||||||||    
T  26506966 ggacaaatcctccttcctgctccaaatggcatcatctttatctcattttgacctgtaacatcaaat 26506901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 15176356 - 15176402
Alignment:
Q  20 ggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    ||||| |||||||| || |||||||| ||||||||||||||||||||    
T  15176356 ggacacattctcctccctgctccaaatggcatcatctttatctcttt 15176402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 55017133 - 55017087
Alignment:
Q  20 ggacaaattctccttccagctccaaacggcatcatctttatctcttt 66  Q
    |||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  55017133 ggacaaatcctcctcccagcaccaaacggcatcatcttcatctcttt 55017087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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