View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18512_low_8 (Length: 458)
Name: NF18512_low_8
Description: NF18512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18512_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 25352337 - 25352776
Alignment:
| Q |
1 |
atggtacaggcgggttagggtaagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352337 |
atggtacaggcgggttagggtcagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcaga |
25352436 |
T |
|
| Q |
101 |
tacttcttgattatggttgagaggctttccatcaacaagcacttctggttgtcgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352437 |
tacttcttgattatggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctt |
25352536 |
T |
|
| Q |
201 |
tttgtttttctctttgctgcttcatttggtttaacattgcttagagtgtttacctgatataacaaacacattaccaagttagataaaactaacacnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25352537 |
tttgtttttctctttgctgcttcatttggtttaacattgcttagagtgtttacctgatataacaaacacattagcaagttagataaaactaacacaaaaa |
25352636 |
T |
|
| Q |
301 |
nnnnnnngagcaattaatttagcagaataaaactataaaattaccctctttttaggttcttgtttgatattgtgtttaaccaagactttcgcaacccact |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352637 |
caaaaaacaacaattaatttagcagaataaaactataaaattaccctctttttaggttcttgtttgatattgtgtttaaccaagactttcgcaacccact |
25352736 |
T |
|
| Q |
401 |
tagacctggaactcttgaaatttaacaccattccacaagt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352737 |
tagacctggaactcttgaaatttaacaccattccacaagt |
25352776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 440
Target Start/End: Original strand, 25357013 - 25357450
Alignment:
| Q |
12 |
gggttagggtaagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttcttgat |
111 |
Q |
| |
|
|||||||||| ||||| |||||||| ||| || ||||||| ||||||||||| |||||||| ||| |||||| |||| ||||| |||| || || |
|
|
| T |
25357013 |
gggttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcat |
25357112 |
T |
|
| Q |
112 |
tatggttgagaggctttccatcaacaagcacttctggttgtcgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgtttttct |
211 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25357113 |
tctggttgagaggctctccatcaacaagcacttctggttgttgttgatctaattctttggtaatcttataacatgcatcgcg---tctttttgtttttct |
25357209 |
T |
|
| Q |
212 |
ctttgctgcttcatttggtttaacattgcttagagtgttta------------cctgatataacaaacacattaccaagttagataaaactaacacnnnn |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
25357210 |
ctttgctgcttcgtttggtttaacattgcttagagtgtttaccttaggcctcccctgatataacaagcacattagcaagttagataaaacaaacacaaaa |
25357309 |
T |
|
| Q |
300 |
nnnnnnnngagcaattaatttagcagaataaaactataaaattaccctctttttaggttcttgtttgatattgtgtttaaccaagactttcgcaacccac |
399 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25357310 |
acaaagaagaacaattaatttagcagaataaaacaataaaattaccctcttgttaggttcttgattgatattgtgtttaaccaagacttccttaacccac |
25357409 |
T |
|
| Q |
400 |
ttagacctggaactcttgaaatttaacaccattccacaagt |
440 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25357410 |
ttagacctggaactattgaaatttaacaccattccacaagt |
25357450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University