View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_high_10 (Length: 292)
Name: NF18513_high_10
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 54572384 - 54572667
Alignment:
| Q |
1 |
taatttgcatcatatcctatttgctcttatgccttctcaccctctgccgtgctgaagcgtcgttattttgacttatcaagggcaatgcagatttcaacag |
100 |
Q |
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| T |
54572384 |
taatttgcatcatatcctatttgctcttatgccttctcaccctccgccgtgctgaagcgtcgttattttgacttatcaagggcaatgcagatttcaacag |
54572483 |
T |
|
| Q |
101 |
tcatcaccactcgcagtgtattgattttggatgagttgctacttgctattattagacaaatgtctactctttaaatgaataaaagaaagcaagtatatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54572484 |
tcatcaccactcgcagtgtattgattttggatgagttgctatt---aattattagacaaatgtctactctttaaatgaataaaagaaagcaagtatatac |
54572580 |
T |
|
| Q |
201 |
aaacaactgcctacattttgtatcaagatatttcgaatctccctccacatttgcttgcacgttttattt---ttacattcctatgct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |
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| T |
54572581 |
aaacaactgcctacattttgtatcaagatatttcgaatctccctacacatgtgcttgcacgttttatttaccttacattcctatgct |
54572667 |
T |
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