View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_high_4 (Length: 460)
Name: NF18513_high_4
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 562846 - 562421
Alignment:
| Q |
17 |
atcgtaattaaattgtttttgaggtaaagctatatgaaagcagataaaatatgattatattttcatctcctaaatgcatttaacaaatattatataagaa |
116 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
562846 |
atcgttattaaattatttttgaggtaaagctatatgaaagcagataaaatatgattattttttcatctccttaatgcatttaacaaacattatataagaa |
562747 |
T |
|
| Q |
117 |
tgtgtatgacgtttttagcttaaatatatgaccggaaagaatatcatattcgcttctaattatatggttgagctaagaacatgatccatatccttacata |
216 |
Q |
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||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
562746 |
tgtgtataacatttttagcttaaatatatgatcggaaagaatatcatattcgcttataattatatgtttgagctaagaacgcgatccatatccttacata |
562647 |
T |
|
| Q |
217 |
aataaatttaatttgtgaaatgcatttaagtaatgaaaaaacaattttagacattctttaatttgtaaaactcactacgttagataatcaagagtcatgg |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
562646 |
aaaaaatttaatttgtgaaatgcatttaagtaatgaaaaaacaattttagacattctttaatttgtaaaactcactacgatagataatcaagagtcatgg |
562547 |
T |
|
| Q |
317 |
agattgggagaccaactaatttgagttaagaaataaaagagatggagatccgtcgagttctaatttaaacaaattaacccaactacaacatttgtcattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
562546 |
agattgggagaccaactaatttgagttaagaaat-aaagagatggagatccgtcgaattctaatttaaacaaattgacccaactacaacatttgtcattt |
562448 |
T |
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| Q |
417 |
nnnnnnngagcccatgctaaacaatct |
443 |
Q |
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|||||||||||||| ||||| |
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| T |
562447 |
aaaaaaagagcccatgctaaaaaatct |
562421 |
T |
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