View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_low_10 (Length: 338)
Name: NF18513_low_10
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 320
Target Start/End: Original strand, 34463104 - 34463424
Alignment:
| Q |
2 |
ggatctcgaagaatatgggctcaacttgtgaacaactcaggtaaccaatgagttacatcaattgcaccaaattgatgattttcattatatatagtattca |
101 |
Q |
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| T |
34463104 |
ggatctggaggaatatgggctcaacttgtgaacaactcaggtaaccaatgagttacattaattgcaccaaattgatgattttcattatatatagtattca |
34463203 |
T |
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| Q |
102 |
aatataagtt--gtgtttcagggtttgaagctgcgggaacacgtacgccatcaaatattttcccttggaccataattggaaccgaatcatctgttaagct |
199 |
Q |
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| T |
34463204 |
aatataagttttgtgtttcagggtttgaagctgcaggaacacgtacgccatcaaatattttcccttggaccataattggaacagaatcatctgttaagct |
34463303 |
T |
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| Q |
200 |
acagactgagcttagttcttgctttgaacgcaataaggttgcattaagaatggatgtgttatgtgacaagtgccctcctgatggtgttggagtctctaac |
299 |
Q |
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| T |
34463304 |
acagactgagcttagttcttgctttgaacgcaataaggttgcattaagaatggatgtgttatgtgacaagtgccctcctgatggtgttggagtctctaac |
34463403 |
T |
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| Q |
300 |
ccaggtttttggggcatggtg |
320 |
Q |
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| T |
34463404 |
ccaggtttttggggcatggtg |
34463424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 61 - 320
Target Start/End: Original strand, 34446889 - 34447149
Alignment:
| Q |
61 |
aattgcaccaaattgatgattttcattatatatagtattcaaatat-aagttgtgtttcagggtttgaagctgcgggaacacgtacgccatcaaatattt |
159 |
Q |
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| T |
34446889 |
aattgcaccaaattgatgattttgattatgtatagtgttcaaatatgaatttgtgtttcagggtttgaagctggggggaaaaagatgccatcaaattttg |
34446988 |
T |
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| Q |
160 |
tcccttggaccataattggaaccgaatcatctgttaagctacagactgagcttagttcttgctttgaacgcaataaggttgcattaagaatggatgtgtt |
259 |
Q |
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| T |
34446989 |
caccttggaccatagttggaacagaaacaactattcatgtagaaactgagcttagttcttgctttgaacgcaataaggttgcattgagaatggatgtgct |
34447088 |
T |
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| Q |
260 |
atgtgacaagtgccctcctgatggtgttggagtctctaacccaggtttttggggcatggtg |
320 |
Q |
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| T |
34447089 |
atgtgataattgtccatttgatggtgttggaatttctaacccaggttattggggcatggtg |
34447149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 319
Target Start/End: Original strand, 34435882 - 34436159
Alignment:
| Q |
45 |
accaatgagttacatcaattgcaccaaattgatgattttcattatatatagtattcaaatataag---ttgtgtttcagggtttgaagctgcgggaacac |
141 |
Q |
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| T |
34435882 |
accaatcagtcacattaatttcacacaattgatgattttaattatgcatagtgttcaaatatatgaatttgtgttttagggtttgaagccggaggaactc |
34435981 |
T |
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| Q |
142 |
gtacgccatcaaatattttcccttggaccataattggaaccgaatcatctgttaagctacagactgagcttagttcttgctttgaacgcaataaggttgc |
241 |
Q |
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| T |
34435982 |
aggttccatcaaattttgacccttgggccatagttggaacagaagcagatattcatgtagtgactgagcttagttctagctttgaacgcaataaggttgc |
34436081 |
T |
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| Q |
242 |
attaagaatggatgtgttatgtgacaagtgccctcctgatggtgttggagtctctaacccaggtttttggggcatggt |
319 |
Q |
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||| ||||| |||||| ||||||| || ||||| ||||||||||||| | ||||||||||||||| ||||||||| |
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| T |
34436082 |
attgagaattgatgtgctatgtgataattgcccagttgatggtgttggaatttctaacccaggttttaagggcatggt |
34436159 |
T |
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