View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_low_11 (Length: 335)
Name: NF18513_low_11
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 20489899 - 20489585
Alignment:
| Q |
1 |
tgttgattaaagttgattatactaagtatgcatgtgtagttcttaaagttgtttgcactggaaaaggctactctaccattatcctttgctccattggtgg |
100 |
Q |
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| T |
20489899 |
tgttgattaaagttgattatactaagtatgcatgtgtagttcttaaagttgtttgcactggaaaaggctactctaccattatcctttgctccattggtgg |
20489800 |
T |
|
| Q |
101 |
gacttcatgacatatgacgtaccttccttgatgatacttaaagaaaaatttgaagatttacatgacaagacattttctatctattaatattaattatact |
200 |
Q |
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| T |
20489799 |
gacttcatgacatatgac----cttccttgattttacttaaagaaaaatttgaagatttacatgacaagacattttctatctattaatattaattatact |
20489704 |
T |
|
| Q |
201 |
aatctatatttctactattacagctaattacttgaatctgccagtggttggaaattgaaatattacccactaatagtgatttaatatgatgaaaattaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20489703 |
aatctatatttctactattacagctaattacttgaatctgccagtggttggaaattgaaatattacccactaatagtgatttaatatgatgaaaattaaa |
20489604 |
T |
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| Q |
301 |
agtcctttgttatgaaatg |
319 |
Q |
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||||||||||||||||||| |
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| T |
20489603 |
agtcctttgttatgaaatg |
20489585 |
T |
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