View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_low_16 (Length: 245)
Name: NF18513_low_16
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4721697 - 4721925
Alignment:
| Q |
1 |
ctatgcatcaaataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaa |
100 |
Q |
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| T |
4721697 |
ctatgcatcaaataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcgaatgatatatgttcttcttttaa |
4721796 |
T |
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| Q |
101 |
cgtggtcctatcttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttt |
200 |
Q |
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| T |
4721797 |
catggtcttatcttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttt |
4721896 |
T |
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| Q |
201 |
tcctctagtgaggaaagaagactttcttc |
229 |
Q |
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| T |
4721897 |
tcctctagtgaggaaagaagactttcttc |
4721925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 54923707 - 54923878
Alignment:
| Q |
43 |
tagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaacaaatgatacccgaatttcggcaac |
142 |
Q |
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| T |
54923707 |
tagaagatgaggatcttgattcttaattgtcttcgaataatatatgttcttcttttaatgtggtcctatcttcaataacagatacccaactttctgcaac |
54923806 |
T |
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| Q |
143 |
tctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagtgagga |
214 |
Q |
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| T |
54923807 |
tctggtaactcttccttctgagagctcaactaaagtaaaggctcttgctgtaccttctgccactagtgagga |
54923878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 54916016 - 54916066
Alignment:
| Q |
69 |
ttgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaaca |
119 |
Q |
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| T |
54916016 |
ttgccttcaaataatacatgttcttcttttaaggtggtcctgtcttcaaca |
54916066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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