View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_low_17 (Length: 245)
Name: NF18513_low_17
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 51144819 - 51144593
Alignment:
| Q |
1 |
ttcaatattaattttcggcagtgtacatacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51144819 |
ttcaatattaattttcggcagtgtacatacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgat |
51144720 |
T |
|
| Q |
101 |
gatgcttttgcaataaccatactcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51144719 |
gatgcttttgcaataaccatactcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatg |
51144620 |
T |
|
| Q |
201 |
ctatgacaaaacctcctatgaaagttg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51144619 |
ctatgacaaaacctcctatgaaagttg |
51144593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 29938132 - 29938354
Alignment:
| Q |
5 |
atattaattttcggcagtgtacatacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgatgatg |
104 |
Q |
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|||||| |||||| |||| | ||||||||||| |||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
29938132 |
atattatttttcgccagtatgcatacagttcggatggaaccaattgtctgctctactagacttgctgattcagaataagctgcttgtccagttgatgatg |
29938231 |
T |
|
| Q |
105 |
cttttgcaataaccatactcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatgctat |
204 |
Q |
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| T |
29938232 |
cttttgcaataaccttactcgtcacagcagcagacaatacaagaagtggtatactaaatagcatgacaacagttagaagccatcccttagtgaatgctat |
29938331 |
T |
|
| Q |
205 |
gacaaaacctcctatgaaagttg |
227 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
29938332 |
gacaaaacctcctatgaaagttg |
29938354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 51155937 - 51155732
Alignment:
| Q |
22 |
tgtacatacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgatgatgcttttgcaataaccata |
121 |
Q |
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||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
51155937 |
tgtacttacagttcggatggaacctattgtctgctcaactacacttgctgatttagaataagctgcctgtccagttgatgatgcttttgcaataaccaaa |
51155838 |
T |
|
| Q |
122 |
ctcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatgctatgacaaaacctcctatga |
221 |
Q |
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||| |||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||| ||||||| | |
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| T |
51155837 |
ctcatcatagcaccagacaagactacaagtggtatactagatagcatgacgacagttagaagccatcccttagtgaatgatatgacaaaagctcctataa |
51155738 |
T |
|
| Q |
222 |
aagttg |
227 |
Q |
| |
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|||||| |
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|
| T |
51155737 |
aagttg |
51155732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 51198737 - 51198538
Alignment:
| Q |
26 |
catacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgatgatgcttttgcaataaccatactcg |
125 |
Q |
| |
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|||||||||| ||| || ||||||||||| ||||| ||| ||| | |||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
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| T |
51198737 |
catacagttctaatagagcctattgtctgttctacaacagttgcagctttagaataagctgcttgtccactggatgatgcttttgaaataaccatactca |
51198638 |
T |
|
| Q |
126 |
tcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatgctatgacaaaacctcctatgaaagt |
225 |
Q |
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|||| | ||| ||||||| ||||||||| |||| ||| | |||||||||||||| ||||||||| || |||||||||| ||||||||||| | |||||| |
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| T |
51198637 |
tcattgcacccgacaagacaagaagtggaatacaagacatcatgacaacagttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagt |
51198538 |
T |
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