View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18513_low_2 (Length: 836)
Name: NF18513_low_2
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_2 |
 | |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 774; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 18 - 836
Target Start/End: Complemental strand, 42960967 - 42960145
Alignment:
| Q |
18 |
ccaatgaacacaatttttgttcctcttaagaaatcagttaaacaatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42960967 |
ccaatgaacacaatttttgttcctcttaagaaatcagttaaacaatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagct |
42960868 |
T |
|
| Q |
118 |
gtggatttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttatttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42960867 |
gtggatttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttatttt |
42960768 |
T |
|
| Q |
218 |
gacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatat----ggttaattaatg |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
42960767 |
gacacacaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatatatatggttaattaatg |
42960668 |
T |
|
| Q |
314 |
aatattacaagatgtcgcaactctttaaccattcaccgaacacaattaaccgcgatgctggaagtcattaaccatttaccgagcacaatcaacaaggcgt |
413 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42960667 |
aatattacaagatgtcgcaactcattaaccatttaccgaacacaattaaccacgatgctggaagtcattaaccatttaccgagcacaatcaacaaggcgt |
42960568 |
T |
|
| Q |
414 |
gcaatgtctatacgagcattgaatagtaaaatagaaactaacaagtaacatgcatagaagtgatttttcctttcatgataaaccagattgggcagctctc |
513 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
42960567 |
gcaacgtctatacgagcattgaatagtaaaatagaaactaacaagtaatatgcatagaagtaatttttcatttcatgataaaccagattgggcagctctc |
42960468 |
T |
|
| Q |
514 |
aacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattgaagcatttaagggaggattcatctta |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42960467 |
aacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattgaagcatttaagggaggattcatctta |
42960368 |
T |
|
| Q |
614 |
tcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcaccctt |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42960367 |
tcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcaccctt |
42960268 |
T |
|
| Q |
714 |
acgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacaga |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42960267 |
acgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacaga |
42960168 |
T |
|
| Q |
814 |
acaacttcttaacaacactgtga |
836 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42960167 |
acaacttcttaacaacactgtga |
42960145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 35607889 - 35608055
Alignment:
| Q |
123 |
tttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacac |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | | ||||| |||| |
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|
| T |
35607889 |
tttggacagaccaatgacagcattcattgccaccatggtttgttgtcagctgagatatgtcttcactcatcacctaatttgagttgtttaattttcacac |
35607988 |
T |
|
| Q |
223 |
aaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatca |
289 |
Q |
| |
|
| ||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
35607989 |
acaaaattgacattaaatttctagaacaaattagatggttaacatagttcaaatatgcagttaatca |
35608055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 366
Target Start/End: Original strand, 8309412 - 8309561
Alignment:
| Q |
209 |
tgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatcaagtttagtatatggttaat |
308 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||||| ||| |||| ||||||||||||| | ||||| |||| || |||| | || | || ||| || |
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|
| T |
8309412 |
tgttattttgacacaaa--tttgacatcaaatttcaacagcaaaatagatggttaacaaaattcaattatgtggttaattatgtccaatagatg----at |
8309505 |
T |
|
| Q |
309 |
taatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaaccgc |
366 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
8309506 |
taatgaata--acaagatatcgcaactcactaaccattcaccgagcacaattaaccgc |
8309561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 783
Target Start/End: Original strand, 5504339 - 5504537
Alignment:
| Q |
585 |
ttgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgc |
684 |
Q |
| |
|
|||||||||| |||||||| || |||| || ||||||| | | | |||||| |||||| ||||| ||| ||||||| |||||| |||| || ||||| |
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|
| T |
5504339 |
ttgaagcattcaagggaggctttgtcttgtccaaagttggcagtgcttggtcagtaggtgagctcaagttggtcaacaccaatgtgaatgaaaatcctgc |
5504438 |
T |
|
| Q |
685 |
tgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaa |
783 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| | | ||||| |||||||| ||| | | || | ||||| ||||||||| | ||||||||||| |
|
|
| T |
5504439 |
tgttaccttcaactacttcagtcatccatacgatttaaagcgctgcgtcgaagggatcagcatggccattaaagtagtccagtcagaacacttcacaaa |
5504537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 11791979 - 11792056
Alignment:
| Q |
202 |
tgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg |
279 |
Q |
| |
|
|||||| ||| ||||||||| || |||||| ||| ||||||||||||||||||||| |||||||| | |||| ||||| |
|
|
| T |
11791979 |
tgagttgtgtgattttgacataagaatttgacatcaaatttcgacaacaaattagacggttaacacaattcacatatg |
11792056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 29858345 - 29858410
Alignment:
| Q |
214 |
ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg |
279 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||| ||| ||||| |||||||||| |||||||||| |
|
|
| T |
29858345 |
ttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatg |
29858410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 7712428 - 7712361
Alignment:
| Q |
212 |
tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg |
279 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7712428 |
tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacatagttcaaatatg |
7712361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 29246463 - 29246407
Alignment:
| Q |
308 |
ttaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc |
364 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| ||| ||||| |||||||| |
|
|
| T |
29246463 |
ttaatgaatataacaaggtgtcgcaactcattaaccatacactgaacataattaacc |
29246407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 10890538 - 10890479
Alignment:
| Q |
213 |
attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa |
275 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
10890538 |
attttgacacaaa--tttgacattaa-tttcgacaacaaactagatggttaacagagttcaaa |
10890479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 473967 - 473905
Alignment:
| Q |
225 |
aaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat |
287 |
Q |
| |
|
||||||| ||| ||||||| || |||||||||||| ||||||||||| | ||||| ||||||| |
|
|
| T |
473967 |
aaatttgacatgaaatttcaaccacaaattagatgattaacatagtttacatatgtggctaat |
473905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 12117214 - 12117149
Alignment:
| Q |
213 |
attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatat |
278 |
Q |
| |
|
||||||||||| ||||||| ||| ||| ||| ||||||| ||| |||||||| |||||||||||| |
|
|
| T |
12117214 |
attttgacacacaaatttgacatcaaacttcaacaacaatttatatggttaatgtagttcaaatat |
12117149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 3182435 - 3182508
Alignment:
| Q |
214 |
ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat |
287 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||| | |||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
3182435 |
ttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggctaat |
3182508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 37702135 - 37702076
Alignment:
| Q |
212 |
tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt |
271 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| |||||||||||||| ||| | |||||| |
|
|
| T |
37702135 |
tattttgaaacacaaatttgtcatcaaatttcaacaacaaattagatagttgatatagtt |
37702076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 13873370 - 13873445
Alignment:
| Q |
203 |
gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg |
279 |
Q |
| |
|
||||| ||||| ||||||||||||||| | ||||||| |||||||| ||| || || |||||||||||| ||||||| |
|
|
| T |
13873370 |
gagttgtgttactttgacacaaaaatt-gacattaaaattcgacaaaaaactaaattgttaacatagtttaaatatg |
13873445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 32783514 - 32783461
Alignment:
| Q |
213 |
attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaaca |
266 |
Q |
| |
|
||||||||||| ||||||| | | ||||||| ||||||||||||| |||||||| |
|
|
| T |
32783514 |
attttgacacacaaatttgacttcaaatttcaacaacaaattagacggttaaca |
32783461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 56081324 - 56081265
Alignment:
| Q |
212 |
tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt |
271 |
Q |
| |
|
|||||||||||||||||||| ||| ||| || |||||||| ||||||| |||||| |||| |
|
|
| T |
56081324 |
tattttgacacaaaaatttgacataaaaatttgacaacaatttagatgattaacacagtt |
56081265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 40829719 - 40829662
Alignment:
| Q |
307 |
attaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc |
364 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||| |||||||| ||| || ||||||||||| |
|
|
| T |
40829719 |
attaatgaatataacaaggtgtagcaactcattaaccatccactgagcacaattaacc |
40829662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 2443403 - 2443458
Alignment:
| Q |
203 |
gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagat |
258 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
2443403 |
gagttgtgttattttgacacaaaaattcaacatcaaatttcgacaccaaattagat |
2443458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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