View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18513_low_21 (Length: 202)
Name: NF18513_low_21
Description: NF18513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18513_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 11026694 - 11026528
Alignment:
| Q |
20 |
atatgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttcc |
119 |
Q |
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| T |
11026694 |
atatgaattttcatttcctcttcatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttcc |
11026595 |
T |
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| Q |
120 |
ttcctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttcc |
186 |
Q |
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| T |
11026594 |
ttcctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttcc |
11026528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 10931024 - 10930868
Alignment:
| Q |
30 |
tcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcctat |
129 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
10931024 |
tcatttcctcttgatcatctataagattataaatccactccggatagtaaacatgactactgttttcctctaagtcctctgttatcttcttccctcctat |
10930925 |
T |
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| Q |
130 |
tgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttcc |
186 |
Q |
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| T |
10930924 |
tgtttcaagcaacatcattccataactataaacatctgatttgtaagacacatttcc |
10930868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 10993236 - 10993072
Alignment:
| Q |
22 |
atgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttcctt |
121 |
Q |
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| T |
10993236 |
atgaattctcatttcctcttcatcatctataagtttataaatccattccggatagtaaacatgactactgttttcctctaaatcctctgtgattttcttc |
10993137 |
T |
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| Q |
122 |
cctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttcc |
186 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10993136 |
cctcctattgtttcaagcaacatcattccataactataaacatctgatttgtaagacacatttcc |
10993072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 10907148 - 10906985
Alignment:
| Q |
22 |
atgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttcctt |
121 |
Q |
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| T |
10907148 |
atgaattctcatttcgtcttgatcatctataagattatcaatccactccggatagtaaacatg-ctactgttttcctctaagtcctctgttatcttcttc |
10907050 |
T |
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| Q |
122 |
cctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttcc |
186 |
Q |
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| T |
10907049 |
cctcctattgtttcaagcaacatcattccataactataaacatctgatttgtaagacacatttcc |
10906985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 11041395 - 11041231
Alignment:
| Q |
22 |
atgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttcctt |
121 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
11041395 |
atgaattctcatttcctcttcatcatctataagattataaatccactccggatagtaaacatgactactgttttcctctaaatcctctgtgatcttcttc |
11041296 |
T |
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| Q |
122 |
cctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttcc |
186 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||| |
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| T |
11041295 |
cctcctatcgtttcaagcaacatcattccataactataaacatccgatttgaaagacacgtttcc |
11041231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 31145387 - 31145428
Alignment:
| Q |
132 |
tttcaagcaacatcattccataactgtaaacatctgatttgt |
173 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
31145387 |
tttctagcaacatcattccataactataaacatcagatttgt |
31145428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 31171700 - 31171741
Alignment:
| Q |
132 |
tttcaagcaacatcattccataactgtaaacatctgatttgt |
173 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
31171700 |
tttctagcaacatcattccataactataaacatcagatttgt |
31171741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 31189445 - 31189486
Alignment:
| Q |
132 |
tttcaagcaacatcattccataactgtaaacatctgatttgt |
173 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
31189445 |
tttccagcaacatcattccataactataaacatcagatttgt |
31189486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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